Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g2087 | ATGGAGGAAAAACGTCCTCCATCTACCGTCGACACACCGGCGCCAGAACCAACACCATCTCGCCGCCGTGCCGGAGGAAACAAACGAAAATCCGGTTCCCTCAACGCCTCCAATTCCGCTTCAACCTCTTCCAAACGCATTACTCGCGAGAAAGCTTCACCTCTTCACCATCCTCCTCCGCATAACGGTCCCTTAACTAGGGCTCGTCAAATCCCTAACAATTCCTCCGCCGCCGCGAATTCTTCGACCGCTGGTGGTTCTGCTTCTGCTCCCGCCGCGGTGAAACATGCTCCACAGACGCAGGCGTTGGTTGTGGCGGCGGAGCAGCTTAAGAAGAAGGAGAGTGAGTGGGAGAGTATGGAAGCTGAAATTGAAGCGGAATTCAAAGCTATTAGATCTCGTGATGCGAATGCTCATGTTGTTCCTACTCATTGTGGTTGGTTTTCGTGGTCGGATATACATTCAATTGAGAAACGTATGATGCCTTCTTTCTTTAATGGAATATCTGAAAATCGGACTCCTGATAAATACATGGAGATACGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACATACAAATTGAGTTGAAAGATTTATCAGAGCTTGATATCGGGGATTCGGATGCTAGGCAAGAGATAATGGAGTTTCTTGACTATTGGGGTTTAATTAACTTCCACCCGTTCCCTTCAACGGATTCTGCTGTGGCAAGCACCGGCGATGATGGGGAAGCAGAAAAGAATTCCTTGCTTGAAAAACTATATCACTTCGAAACTCTTCAATCATGCCCGCCTGCTGTTCAGAAGACTGGCCTAATAACTCCTGCTATGACCTCTGGCTTGTTTCCAGAGCCAGCGATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGGTGATTGTTCTCGCAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATCTATGTACGGACTGCTTCAATAATAGAAAATTTGGCACCGGCATGTCTCCATTGGATTTTATACTCATGGAACCAGCTGAAGCCGCAGGGGTTAGTAGTGGGAAGTGGACTGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAACTCTATAAAGAAAATTGGACTGAAATTGCAGAACATGTTGGAACAAAATCAAAAGCTCAGTGCATATTACATTTTGTTCAAATGCCAATTGAGGATGCCTTTGTTGACTGTGATGATGATGTTGATGCTGGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACAATTTGCCTATGGATGAAGATAAAGCTAAAGATGCTTCAGAAGTTATTGAGAATGACATTAGTGATAGCATCAAAGGCCATGATGAAACTTCTCAGGCTGAAGATGTCAAAGTGAAAGATAATCAAGAGGAGACTCCAAAGTTACAAGATGGTAGTGATGAGAAAACTAGTGAGGGAACTCCTAAATTAGAAGATGATAATAAAGTAAAATTGGGCGAGGAAGTAGGTGATGACTGTGTTTTAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCATCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTGCACAGTTAGTAGGTTCTGATCTGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATGCTCCTAGCACTGAGATTGCTTCAAGGTGTTGCTTTGTTCTAGAAGATCCACCAGATGATAAGAAGGACACAGCTACTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGACTGACAAAAATGTACAACAGGATGCAGCGATGTTAAATGATAAAGATTTAGAAAAAGATCACCAGAAAACGAAGATTGCAAGTGATGCTTCAGAAGACAAGATACATCAGGCTTCTACAGATGGTGGAATCTCAGAAAAACCAATTTCTTCAGAGGGGGAAGCAATGAATAATCATGAGAGTGGGCTTGACAACTGTAATGATCCCAGCATTTCAAAGGCACCCAATGATCAAGCTCAGGGTACTCTGCATAATTCAAGTGGTTCAACAACCAAAGCTGAAATTCCACCTAGTTCTGAGGAGGTTCAAGAGAGAACTTCAAATGAAGAACCTGGCCATCCTATAGAGGAACAAAAAGAAGGAAGTGTGTCTGATTCTCATCCATCTGAAAAGAATGAAATTCAACAATCAATTAAATCCAATTTACCAGTGGAGCTACCCAAGCCAGCAGAGACACCAAAGTCTGATGACATGGTGTCTGATTCTATGCCCTCAGATACGAACAAGCCTCAAAAACAGCTATCTACAAATGCAGTCTCTGAGTCTCAAAAAACTACAGACTCTGCAATGGATGTTGATGTAGTTTCTAATTCCTTGCCATCAAAGATTGACTCCCAGCCACTAACATCTTCCCAAGATAATGAGACACACAAGGATGTAGATATGATGCCATCTTCACATCCAATTAAATCGAGTGTGGGTGCTGAAAATGGTGCAATTGCAGGGGCAGTTGAAGATTGTGCAGGAAATGGTATGGAAGTGAAAAATGACGGTTCAAAGACTAAACAGGATAGCAGCTTTGAGAAAGTGAAACGTGCAGCTGTTTCTACATTAGCAGCAGCAGCAGTGAAGGCAAAAGTTCTAGCAAATCAAGAAGAAGATCAAATCCGAGAACTTACTTCAGCGTTGATAGAAAAGCAGTTGCATAAGTTGGAAACAAAGTTGGCTTTCTTCAATGATATGGAACATTTGGTGATGAGAGTAAAGGAGCTTTTAGATCGGTCGCGGCATAAGCTTTACCATGAACGTGCTATGATAATTTCATCCCGCCTTGGTGTACCGGCTTCCTCATCCAGAGGTGTACCACCATCCATACCAACCAATAGAATTCCTATGAATTTTGCAAACTCACTCCAAAGACCGCAATTCAACATGAATCCTCAAGGGCCACTTATTTCTAGACCTGGGAGCACTGCAGCTACTACCCTTCCAAACCCATTAATGTCTGCAACTGCAGCAGGAAGTTCAGTTCGGCCATCCAGCCAGGAAAACCTTTCTTCTGTTGGGACAGAATAA | 3126 | 0.4335 | MEEKRPPSTVDTPAPEPTPSRRRAGGNKRKSGSLNASNSASTSSKRITREKASPLHHPPPHNGPLTRARQIPNNSSAAANSSTAGGSASAPAAVKHAPQTQALVVAAEQLKKKESEWESMEAEIEAEFKAIRSRDANAHVVPTHCGWFSWSDIHSIEKRMMPSFFNGISENRTPDKYMEIRNWIMKKFHSNPNIQIELKDLSELDIGDSDARQEIMEFLDYWGLINFHPFPSTDSAVASTGDDGEAEKNSLLEKLYHFETLQSCPPAVQKTGLITPAMTSGLFPEPAIAEELVKQEGPAVEMLEYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGTGMSPLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPIEDAFVDCDDDVDAGSKETADPAATNNNLPMDEDKAKDASEVIENDISDSIKGHDETSQAEDVKVKDNQEETPKLQDGSDEKTSEGTPKLEDDNKVKLGEEVGDDCVLNALKEAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLAQLVGSDLAVASAHNYIKSLSGNAPSTEIASRCCFVLEDPPDDKKDTATSERDSKSEGDQTDKNVQQDAAMLNDKDLEKDHQKTKIASDASEDKIHQASTDGGISEKPISSEGEAMNNHESGLDNCNDPSISKAPNDQAQGTLHNSSGSTTKAEIPPSSEEVQERTSNEEPGHPIEEQKEGSVSDSHPSEKNEIQQSIKSNLPVELPKPAETPKSDDMVSDSMPSDTNKPQKQLSTNAVSESQKTTDSAMDVDVVSNSLPSKIDSQPLTSSQDNETHKDVDMMPSSHPIKSSVGAENGAIAGAVEDCAGNGMEVKNDGSKTKQDSSFEKVKRAAVSTLAAAAVKAKVLANQEEDQIRELTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDRSRHKLYHERAMIISSRLGVPASSSRGVPPSIPTNRIPMNFANSLQRPQFNMNPQGPLISRPGSTAATTLPNPLMSATAAGSSVRPSSQENLSSVGTE* | 1042 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
| Mtr4g2087 | 1041 | PANTHER | SWI/SNF COMPLEX SUBUNIT SWI3D | 38 | 1005 | - | - | |
| Mtr4g2087 | 1041 | Pfam | Zinc finger, ZZ type | 304 | 339 | IPR000433 | GO:0008270 | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 713 | 737 | - | - | |
| Mtr4g2087 | 1041 | Pfam | SWIRM-associated region 1 | 887 | 965 | IPR032451 | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 587 | 612 | - | - | |
| Mtr4g2087 | 1041 | SMART | zz_5 | 301 | 345 | IPR000433 | GO:0008270 | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 587 | 843 | - | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 768 | 823 | - | - | |
| Mtr4g2087 | 1041 | Coils | Coil | 103 | 127 | - | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 622 | 650 | - | - | |
| Mtr4g2087 | 1041 | SMART | sant | 360 | 408 | IPR001005 | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 653 | 712 | - | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 453 | 503 | - | - | |
| Mtr4g2087 | 1041 | CDD | ZZ_RSC8 | 305 | 349 | IPR041984 | - | |
| Mtr4g2087 | 1041 | Gene3D | - | 359 | 410 | - | - | |
| Mtr4g2087 | 1041 | ProSiteProfiles | Myb-like domain profile. | 356 | 406 | IPR001005 | - | |
| Mtr4g2087 | 1041 | ProSiteProfiles | SWIRM domain profile. | 139 | 236 | IPR007526 | GO:0005515 | |
| Mtr4g2087 | 1041 | SUPERFAMILY | Homeodomain-like | 359 | 411 | IPR009057 | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 67 | 88 | - | - | |
| Mtr4g2087 | 1041 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 362 | 398 | IPR017930 | - | |
| Mtr4g2087 | 1041 | CDD | SANT | 380 | 405 | IPR001005 | - | |
| Mtr4g2087 | 1041 | Pfam | SWIRM domain | 142 | 227 | IPR007526 | GO:0005515 | |
| Mtr4g2087 | 1041 | ProSitePatterns | Zinc finger ZZ-type signature. | 307 | 333 | IPR000433 | GO:0008270 | |
| Mtr4g2087 | 1041 | PANTHER | SWI/SNF COMPLEX-RELATED | 38 | 1005 | - | - | |
| Mtr4g2087 | 1041 | ProSiteProfiles | SANT domain profile. | 359 | 410 | IPR017884 | - | |
| Mtr4g2087 | 1041 | Gene3D | - | 145 | 230 | IPR036388 | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 997 | 1041 | - | - | |
| Mtr4g2087 | 1041 | SUPERFAMILY | Homeodomain-like | 146 | 228 | IPR009057 | - | |
| Mtr4g2087 | 1041 | Pfam | Myb-like DNA-binding domain | 362 | 404 | IPR001005 | - | |
| Mtr4g2087 | 1041 | SUPERFAMILY | RING/U-box | 299 | 342 | - | - | |
| Mtr4g2087 | 1041 | MobiDBLite | consensus disorder prediction | 738 | 752 | - | - | |
| Mtr4g2087 | 1041 | Gene3D | - | 299 | 347 | IPR043145 | - | |
| Mtr4g2087 | 1041 | ProSiteProfiles | Zinc finger ZZ-type profile. | 302 | 356 | IPR000433 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g2087 | Mtr-Chr4 | 34391871 | 34400273 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2087 | 305 | 402 | EF-hand Containing Proteins | AT3G07740 | 36.697 | 4.53e-12 | 68.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g2087 | K11649 | - | gmx:100799723 | 1333.55 |
Event-related genes