Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2079 ATGGTATCTCAAGCGCTATCAGTTCCTGCAACTCCCACCTTCACCATCGCTTCTCACAGAAGAATCCCTTCTCAACTCGCGTTTTCTCACAGAAACCCTTGCACGATAGCTTCTTCCTTCCATAGCCCCTATGGTAGTTCTTCTCAAATCGGCTTATCAAGTAAAACCCATGGTTTTCGCTTAAAACTTGATGAGAAAAGTACACATGATGTTGGTACAAGTTATGGTGTAATTGAAGCCAAGACGGGGAACCCACCAATAACACCAGCTATCATGACTCCTGGAGGAGCTCTTGATCTCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGACAGCCAGTTAACTCACAAGTGGCTCAGAGAGTTATATCGCAGCTTGTGACTCTGGCCACTATTGATCCAGATGCAGATATACTGATGTATATAAATTGCCCTGGTGGAAGCACTTATTCAGTGCTTGCAATTTATGATTGCATGTCTTGGATAAAGCCAAAGGTTGGTACAGTATGTTTTGGAGTAGCTGCAAGCCAAGGAACACTTCTCCTTGCCGGTGGGGAGAAGGGAATGCGCTATTCAATGCCAAATGCTCGCATTATGATTAATCAACCACAATGTGGATTTGGGGGTCATGTCGAGGATGTGAGACGTCTCGTGAATGAATCTGTTCAATCCCGCTATAAAATGGAGAAGATGTTCAGTGCTTTCACCGGACAGGCTTTAGAGAAGGTGCAAGAGTACACAGAGAGGGACAGTTTTCTTTCTGTTTCTGAGGCTTTGGAGTTTGGTCTTATTGATGGTGTCCTGGAAACAGAGTATTGA 825 0.4388 MVSQALSVPATPTFTIASHRRIPSQLAFSHRNPCTIASSFHSPYGSSSQIGLSSKTHGFRLKLDEKSTHDVGTSYGVIEAKTGNPPITPAIMTPGGALDLSSVLFRNRIIFIGQPVNSQVAQRVISQLVTLATIDPDADILMYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGTLLLAGGEKGMRYSMPNARIMINQPQCGFGGHVEDVRRLVNESVQSRYKMEKMFSAFTGQALEKVQEYTERDSFLSVSEALEFGLIDGVLETEY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2079 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 14 274 IPR023562 -
Mtr4g2079 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 14 274 - -
Mtr4g2079 274 Pfam Clp protease 98 272 IPR023562 -
Mtr4g2079 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Mtr4g2079 274 Gene3D - 85 274 - -
Mtr4g2079 274 SUPERFAMILY ClpP/crotonase 98 272 IPR029045 -
Mtr4g2079 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2079 Mtr-Chr4 34330646 34335361 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2079 K01358 - gmx:100799710 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2079 4 34330646 34335361 Mtr4g2079 4 34330646 34335361 ECH