Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2059 ATGGACATTGATTTCAAAGAATACCAATTACGCTGTGAACTCCACGGCCACGAAGACGACGTTCGCGGAATAACTATCTGCGGCGGCGATAACGGCGGAATAGCAACCTCATCGCGTGACAAAACGATTAGGTTATGGACTCGAGATAATCGCAAATTCGTCTTGGACAAGGTTCTGGTAGGTCACACAAGCTTTGTGGGACCTATAGCATGGATTCCACCGAACCCTGATTTGCCACACGGTGGTGTTGTTTCTGGTGGTATGGATACTCTTGTGTTGGTTTGGGACTTGAATAGTGGTGAGAAGGTGCAGAGTCTTAAAGGTCATCAATTGCAGGTTACTGGTATTGTGGTTGATGATGGTGATCTTGTTTCGTCTTCTATGGATTGCACTTTGAGGAGGTGGAGAAATGGGCAATGCATAGAGACCTGGGAGGCTCACAAGGGGCCGATTCAAGCAGTTATAAAGCTACCCACAGGAGAGCTTGTTACAGGTTCAAGTGACACTACTTTAAAGACTTGGAAGGGCAAAACATGTTTACATACTTTTCAAGGACATGCAGATACTGTTCGTGGCTTGGCTGTGATGTCTGATCTTGGAATCCTATCTGCATCCCATGATGGTTCTCTGAGATTATGGGCAGTAAGTGGTGAAGGGTTAATGGAGATGGTTGGCCATACTGCAATTGTTTATTCAGTTGATTCACATGCATCAGGACTTATTGTCAGCGGTAGCGAAGACCGTTTTGCAAAAATATGGAAAGATGGAGTTTGTGTCCAGAGCATAGAGCATCCTGGTTGTGTTTGGGATACAAAATTTATGGAAAATGGGGATATTGTGACAGCATGTTCCGATGGAATTGCACGCATCTGGACTGTAAATCAGGATTATTTTGCTGACCAGCTAGAGCTTGATTTATACACTTCGCAACTTTCTCAATACAAGTCTAGTAGAAAGAGGGTTGGAGGATTGAAATTGGAGGAGTTACCAGGCTTGGATACACTGAAGATCCCAGGAACTTCTGATGGCCAGACAAAAGTTGTCAGAGAGGGAGATAACGGAGTTGCGTATGCATGGAACATGGCAGAACAGAAATGGGATAAAATTGGTGAAGTTGTTGATGGACCGGAAGAATCAAATCGCCCTCTCTTCGATGGTGTTCAGTATGATTATGTGTTTGATGTGGATATTGGAGATGGTATGCCTATCAGGAAGTTGCCATACAACCGATCAGATAATGCATATGATGCTGCTGATAAATGGCTACTTAAGGAGGGTCTTCCTCTTTCTTTTCGTGAGCAAGTCGTACAGTTCATACTTCAAAATTCTGGACAAAAAGATATTACTTTTGATGCTTCATTTCGTGATCCGTACACCGGCTCCAATGCTTACGTACCAGGTCAACCTTCTCGCACATCTGATATCTCTGCGAAGCCTACTTTCAAGCATATTCCTAAGAAAGGGATGCTTGTTTTTGATACTGCTCAATTTGATGGGATTCTTAAAAAGATTGCCGAGTTCAATAATGCCTTATTATCCGACCAGGGAAATCAGAAGTTGTCTTTGACTGAGTTGGATGTTGCCAGACTGGATGCCATTGTTAAAACACTGAAAGATACATCATATTATCATTCCAGTAAATTTGCAGAATCTGAAATAGCTTTGCTACTGAATATGCTATCTTCATGGCCAACCACAATGATATTTCCTGTCATTGATATTACAAGGATGGTAGTTCTTCACCCAGACGGGGCTATTGCACTTCAGAAGCATGTTGAATCTGAAAAAGACATTTTAATGGAAGTGATTAAGAAAGTTACCATTAACCCAACGATTCCTGCAAATCTGTTGACCAGTATTCGTGCTGTCTCCAATCTCTTTAAGAATTCATGCTTCTATAACTGGTTGCAGAAACATCGCAGTGAGATTCTTGATGCTTTCTCAAGTTGTAGTTCATCTACAAACAAAAATTTGCAGTTATCCTACTCTACATTGATACTCAATTATGCAGTGCTATTGATTGAATCTAAGGATCAAGAAGGTCAATCTCATGTTCTATCAGCAGCACTTGAGATTGTCGAGGATGAAAATGTGGCACCTGATTCCAAATTTCGTGCTTTAGTTGCCGTTGGATCACTGATGCTTGAGGGTCTTGTGAAAAAAATAGCACTGGACTTTGATGTTTTGAGCATTGCAAAAGCAGCAAAGGGTTCTAAGGACTCCAAGATTGCTGAAGTTGGATCTGACATCGAGCTAGTATCAAAGCAAAGCTGA 2274 0.4191 MDIDFKEYQLRCELHGHEDDVRGITICGGDNGGIATSSRDKTIRLWTRDNRKFVLDKVLVGHTSFVGPIAWIPPNPDLPHGGVVSGGMDTLVLVWDLNSGEKVQSLKGHQLQVTGIVVDDGDLVSSSMDCTLRRWRNGQCIETWEAHKGPIQAVIKLPTGELVTGSSDTTLKTWKGKTCLHTFQGHADTVRGLAVMSDLGILSASHDGSLRLWAVSGEGLMEMVGHTAIVYSVDSHASGLIVSGSEDRFAKIWKDGVCVQSIEHPGCVWDTKFMENGDIVTACSDGIARIWTVNQDYFADQLELDLYTSQLSQYKSSRKRVGGLKLEELPGLDTLKIPGTSDGQTKVVREGDNGVAYAWNMAEQKWDKIGEVVDGPEESNRPLFDGVQYDYVFDVDIGDGMPIRKLPYNRSDNAYDAADKWLLKEGLPLSFREQVVQFILQNSGQKDITFDASFRDPYTGSNAYVPGQPSRTSDISAKPTFKHIPKKGMLVFDTAQFDGILKKIAEFNNALLSDQGNQKLSLTELDVARLDAIVKTLKDTSYYHSSKFAESEIALLLNMLSSWPTTMIFPVIDITRMVVLHPDGAIALQKHVESEKDILMEVIKKVTINPTIPANLLTSIRAVSNLFKNSCFYNWLQKHRSEILDAFSSCSSSTNKNLQLSYSTLILNYAVLLIESKDQEGQSHVLSAALEIVEDENVAPDSKFRALVAVGSLMLEGLVKKIALDFDVLSIAKAAKGSKDSKIAEVGSDIELVSKQS* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2059 757 Pfam PUL domain 484 749 IPR013535 -
Mtr4g2059 757 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Mtr4g2059 757 PRINTS G protein beta WD-40 repeat signature 83 97 IPR020472 -
Mtr4g2059 757 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Mtr4g2059 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 254 IPR001680 GO:0005515
Mtr4g2059 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 223 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 7 47 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 52 96 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 99 136 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 255 292 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 137 175 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 176 214 IPR001680 GO:0005515
Mtr4g2059 757 SMART WD40_4 216 254 IPR001680 GO:0005515
Mtr4g2059 757 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 4 753 - -
Mtr4g2059 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 56 IPR001680 GO:0005515
Mtr4g2059 757 Pfam PFU (PLAA family ubiquitin binding) 338 446 IPR015155 -
Mtr4g2059 757 ProSitePatterns Trp-Asp (WD) repeats signature. 83 97 IPR019775 -
Mtr4g2059 757 ProSiteProfiles PFU domain profile. 358 453 IPR015155 -
Mtr4g2059 757 SUPERFAMILY WD40 repeat-like 5 303 IPR036322 GO:0005515
Mtr4g2059 757 CDD WD40 10 291 - -
Mtr4g2059 757 Gene3D - 4 309 IPR015943 GO:0005515
Mtr4g2059 757 Gene3D - 376 451 IPR038122 -
Mtr4g2059 757 Gene3D - 482 753 IPR011989 -
Mtr4g2059 757 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 213 - -
Mtr4g2059 757 ProSiteProfiles PUL domain profile. 482 753 IPR013535 -
Mtr4g2059 757 PANTHER PHOSPHOLIPASE A2-ACTIVATING PROTEIN 4 753 - -
Mtr4g2059 757 Pfam WD domain, G-beta repeat 220 254 IPR001680 GO:0005515
Mtr4g2059 757 Pfam WD domain, G-beta repeat 100 135 IPR001680 GO:0005515
Mtr4g2059 757 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Mtr4g2059 757 Pfam WD domain, G-beta repeat 257 291 IPR001680 GO:0005515
Mtr4g2059 757 Pfam WD domain, G-beta repeat 138 175 IPR001680 GO:0005515
Mtr4g2059 757 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Mtr4g2059 757 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 105 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2059 Mtr-Chr4 34100196 34112807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2059 1 756 Acyl Lipid Metabolism Gene Families AT3G18860 69.868 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2059 K14018 - gmx:100816481 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2059 4 34100196 34112807 Mtr4g2059 4 34100196 34112807 ECH