Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2055 ATGGCTTTCTGTTCGAATCTTTGCCTACGTCTCCCCGCCACCCGCATCGACGTTCCTTCTCCGACCACTTTCCGCTGCCGCAAACTCTTCTCCGTCCGTTGCTCCGCCGATGCCGATTTCGACCCAAAACTCTTCCGTAAGAATCTCACAAGAAGTGAGAATTATAACCGCAAAGGCTTTGGTCATAAAGAAGAGACCCTCAAACTCATGAATCGCGAGTACACAAGTGATGTCATCAAGACTTTGAAGGAAAATGGGTTTGAGTATACATGGGGTAATGTCACTGTGATGCTAGCCGAATCCTTTGGATTTTGCTGGGGGGTTGAGAGGGCTGTTCAAATTGCTTATGAAGCCAGGAAACAATTTCCTGATGAAAAAATTTGGATTACCAATGAAATTATCCATAACCCAACTGTTAATAAGCGGCTAGAGGATATGGAAGTACAGAATATTCCTATTGGAGAAGGGAAGAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATATTGCCTGCTTTTGGAGCTGCAGTTGACGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGCCCGTGGGTTTCAAAGGTATGGAATGTTGTTGAAAAGCACAAAAAAGGAGACTATACCTCGATAATTCATGGTAAATATGCCCATGAGGAAACCGTAGCAACTGCATCTTTTGCTGGGAAGTACATAATTGTGAAAAATATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAATTTAATGGATCCAGTTCAACTAGAGAGGCATTTTTCGAGAAATTTAAATTTGCACTTTCTAAGGGCTTTGATCCAGACAGTGACCTGATAAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGCAGACTAGTGGAGAGGACTATGATGCGCAAATATGGCGTGGAAAACGTTACTGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATTTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTTGTTGGTGGCTGGAACTCGAGCAACACATCACATCTACAAGAGATAGCTGAGGAACGCGGAATTCCTTCTTACTGGATTGACAGCGAGCAAAGAATTGGCCCAGGAAACAGAATAGCATACAAGTTGAATCATGGCGAGCTTGTGGAGAAAGAAAACTTTCTACCAAAGGGTCCATTAAGGATTGGTGTAACATCTGGTGCATCCACACCTGACAAGGTCGTTGAAGATGCTCTTATCAAGGTGTTTGATTTGAAAAGGGAAGAAGCACTACAACTCGCGTAA 1350 0.4267 MAFCSNLCLRLPATRIDVPSPTTFRCRKLFSVRCSADADFDPKLFRKNLTRSENYNRKGFGHKEETLKLMNREYTSDVIKTLKENGFEYTWGNVTVMLAESFGFCWGVERAVQIAYEARKQFPDEKIWITNEIIHNPTVNKRLEDMEVQNIPIGEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTREAFFEKFKFALSKGFDPDSDLIKLGIANQTTMLKGETEEIGRLVERTMMRKYGVENVTEHFISFNTICDATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPKGPLRIGVTSGASTPDKVVEDALIKVFDLKREEALQLA* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2055 449 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 94 441 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Mtr4g2055 449 Gene3D - 105 195 - -
Mtr4g2055 449 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 30 447 - -
Mtr4g2055 449 Gene3D - 196 329 - -
Mtr4g2055 449 Gene3D - 330 448 - -
Mtr4g2055 449 CDD lytB_ispH 96 434 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Mtr4g2055 449 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 96 434 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Mtr4g2055 449 Pfam LytB protein 96 434 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2055 Mtr-Chr4 34067298 34070678 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2055 K03527 - gmx:100818067 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2055 4 34067298 34070678 Mtr4g2055 4 34067298 34070678 ECH