Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2048 ATGAGGTCTATAATAGTGAGAGATTTAGTTGTATACCGTGACCATGTTCAAGCAATAAAATCTGGTTTCACATCAAGTATTTTCACTTGTAATCAACTCATTCACCTTTATTCCAAACATGGTCTTTTAAAAGATGCCCACAAACTGTTCGATGAAATTCCCCACCCAAATGCATACTCTTGGAATGCCCTTATTATGGCTTACATAAAAGCACAAAACTTGACACAAGCACGAGCGGTTTTTGACTCTGCCGTTGATAGAGATTTGGTTTCTTATAATTCCATGTTGTCGGCTTATGTTGGTGCGGACGGGTATGAGACTGAGGCGGTTGATTTGTTTGATAAAATGCAATCTGCACGTGATATGATTGGGATTGATGAGTTCAGTCTCACGACGATGGTTAACTTTAGTGCTAAGTTACGTCTAGTGTGTTATGGGAAGCAGATGCATTCGTATATGGTGAAAACTGCGAGTGATTTAAGCAAGTTTGCATCGAGTTCTTTGATTAATATGTACTCTAAATGTGGTTTGTTTCGTGATGCGTGCAGTGTGGTTAGTGGTTTTGATGGGGTGGTAGACTTGGTTTCGAAGAATGCGATGGTTGCTGCCTGTTGTAGGGAAGGAGAGATGGACATGGCTTTGAATGTGTTTTGGAAAAATCATGAATTGAATGATACTGTGTCTTGGAATACGTTGATTGCAGGATATGCCCAGAATGGTTATATGGATAAAGCACTTGCCTTGTTTGTTAAGATGACTGAAAGAGGTGTTAGGTTTGATGAACATACTTTAGCAAGTGTTTTAAGTGTTTGCTCTGGCCTAAAACATTTGAAACTTGGCAAGTGTGTCCATGCGTGGGTGTTGAAAAATGATTACAATTCAAATCAATTCATTAGCAGCGGCATCGTAGACTTATACTGTAAATGTGGGAATATTCGGTATGCGGAGTTGGTGTATGCAGGAATTGGGATTAAAAGCCAATTTGCAGTTTCCTCATTGATTGTAGGCTATTCATCTCAAGGCGAGATGATGAAAGCCCAAAGGCTTTTTGATTCTCTATTGGAAAGAAACTCTGTTGTCTGGACAGCTCTATGTTCTGGATATGCCAAATCGCAACAGTGTGAAGAAGTCTTCAAACTTTTCAGAAAGTTTGTAACTAGAGAAGAGCTAATTCCTGATGCAATGATCATCATCAGGGTGCTTGGTGCTTGCGCGACACAAGCCACCCTTAGTTTGGGAAAGCAGATTCATACTTACATCTTGAGAATGAGACTTAAGATGGATAAAAAATTGTTGAGTGCTATGGTTGATATGTACTCAAAATGTGGTAATATTATGTATGCCGAGAAAAGCTTCCAACTAATGACTGATAGGGATAGAGATGTGATCTTATATAATGTCATGATAGCTGGTTATGCTCATCATGGTTTTGAAAATAAAGCTATTCAGCTTTTTCACGACATGTTGAAGAAAAATGTCAAGCCAGATGCAGTCACTTTTGTAGCACTTCTATCTGCTTGTCGGCACCGTGGACTAGTAGAACAAGGAGAAATTTTTTTCATTTCTATGGAAGATTACAGTGTATTGCCTGAGATAAACCACTATGCATGTATGGTTGATATGTATGGAAGGGCTAATCAACTAGAAAAGGCATTAGAATTTATGAGGAAGATTCCCATTCAGATAGATGCTACAATTTGGGGAGCATTTCTTAATGCTTGTCAGATAAACAACAATACATCACTTGTCAACAAAGCAGAAGAGGAACTACTAAAAATTGGGGCTGATACTGGGTCTCGGTGTGTGCAATTGGCCAATGTTTATGCTTCTGAGGGAAATTGGAATGAGATGGGAAGAATAAGGAAGAAAATGAGAGTGAAGGAGGCTAAAAAGCTTACTGGTTGCAGTTGGATATATGTGGAAAATGGTATTCATGCATTTACTTCTGGTGATACATCTCATGCAAAAGCAGATGCAATATATTCAACTTTGTTATGCTTGAATTGGAAAGAAGTGAAGCAACTTCATGAAATTTTGGGGTGA 2043 0.3867 MRSIIVRDLVVYRDHVQAIKSGFTSSIFTCNQLIHLYSKHGLLKDAHKLFDEIPHPNAYSWNALIMAYIKAQNLTQARAVFDSAVDRDLVSYNSMLSAYVGADGYETEAVDLFDKMQSARDMIGIDEFSLTTMVNFSAKLRLVCYGKQMHSYMVKTASDLSKFASSSLINMYSKCGLFRDACSVVSGFDGVVDLVSKNAMVAACCREGEMDMALNVFWKNHELNDTVSWNTLIAGYAQNGYMDKALALFVKMTERGVRFDEHTLASVLSVCSGLKHLKLGKCVHAWVLKNDYNSNQFISSGIVDLYCKCGNIRYAELVYAGIGIKSQFAVSSLIVGYSSQGEMMKAQRLFDSLLERNSVVWTALCSGYAKSQQCEEVFKLFRKFVTREELIPDAMIIIRVLGACATQATLSLGKQIHTYILRMRLKMDKKLLSAMVDMYSKCGNIMYAEKSFQLMTDRDRDVILYNVMIAGYAHHGFENKAIQLFHDMLKKNVKPDAVTFVALLSACRHRGLVEQGEIFFISMEDYSVLPEINHYACMVDMYGRANQLEKALEFMRKIPIQIDATIWGAFLNACQINNNTSLVNKAEEELLKIGADTGSRCVQLANVYASEGNWNEMGRIRKKMRVKEAKKLTGCSWIYVENGIHAFTSGDTSHAKADAIYSTLLCLNWKEVKQLHEILG* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 392 IPR002885 -
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat family 225 271 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat family 461 507 IPR002885 -
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Mtr4g2048 680 Pfam E motif 578 638 IPR046848 -
Mtr4g2048 680 Pfam PPR repeat 28 53 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 535 557 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 196 217 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 90 118 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 330 357 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 433 458 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 59 85 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 166 184 IPR002885 -
Mtr4g2048 680 Pfam PPR repeat 359 385 IPR002885 -
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 119 IPR002885 -
Mtr4g2048 680 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Mtr4g2048 680 TIGRFAM PPR: pentatricopeptide repeat domain 28 53 IPR002885 -
Mtr4g2048 680 TIGRFAM PPR: pentatricopeptide repeat domain 59 89 IPR002885 -
Mtr4g2048 680 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Mtr4g2048 680 Gene3D Tetratricopeptide repeat domain 397 514 IPR011990 GO:0005515
Mtr4g2048 680 Gene3D Tetratricopeptide repeat domain 142 277 IPR011990 GO:0005515
Mtr4g2048 680 Gene3D Tetratricopeptide repeat domain 16 141 IPR011990 GO:0005515
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Mtr4g2048 680 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 395 664 - -
Mtr4g2048 680 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 33 414 - -
Mtr4g2048 680 Gene3D Tetratricopeptide repeat domain 278 396 IPR011990 GO:0005515
Mtr4g2048 680 Gene3D Tetratricopeptide repeat domain 515 663 IPR011990 GO:0005515
Mtr4g2048 680 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 414 - -
Mtr4g2048 680 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 395 664 - -
Mtr4g2048 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 60 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2048 Mtr-Chr4 34002142 34005764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2048 63 664 Glycoside Hydrolase AT3G49170 31.466 1.73e-91 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2048 - - gmx:100803987 1073.92