Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2044 ATGACAATTCAAGTTCAAGTAGCCAAACTCCTACACCAACCTCTAAAACCAAATCCAAAAAAAATTCATGTAACCCTCTTCTTCTCCACTTCTTCATCTGAACAAGAAACTCTCATAACCACCGCTGTCTCCATCCTCACAAACCACCGTTCGAAATCCCGTTGGAACACACTCCACACCCTCTACCCAAACACCCTCCCCTCCACCGATTTCTCCCAAATTACACTCCACCTCAAAAACAAACCCCACCTCGCTCTTCACTTCTATCAATGGACACAATCCAAATCCCTCTGTCACCACAACCTCTCCTCTTACTCCACCATCATCCACATCCTCGCACGTGCCCGTCTCCACTCACACGCTTACAACACCATCAAAACCGCCCTTATCAATGACGATTCATCTTCCACGCCTTTGAAGTTATTCGAGATTCTTGTTAATTCTTATCGTGATTGTGGGTCTGCTCCGTTTGTGTTTGATTTATTGATCGAAGTGTGTTTGGAGTCTAGAAAAATTGAATCTTCAATTGAGATTAGTAGAATGTTGTTATCTCGTGGGATTAGTCCTAAAGTTGCTACATTGAATAATTTGATTTCTAGGGTTTGTAGAAAATTTGGGGTGGATGTTGGGTTTGAGATTTATCGTGAGTTTTTTCGGTTGGATAAGGAAAAAGATGAAATTTCGAAAAGGGGTTATGGGTTTAGAGGTTTTAGAGTTGTTAAACCTAATGTACATAGTTTTAATACATTAATGTTATGTTGTTATCAAAGTGGCTTGGTTGAGAAAGTTGAGGAAATTTGGAATGAAATGAGTGAAATGGGTTGTGATCCTAATGCTTACAGTTATAGTTTACTGATTGCTGCGTTTTGTGATGGAGGGAGAATGGAAGATTGTGAGAAGATGTGGGAAGAAATGAGGAAGAAAGAAATTGAGGCTGATGTGGTTAGTTATAATACTATAATTGGTGGGTTTTGTAAGATTGGTGATGTTGGAAGAGCTGAAGAGTTTTATAGAGAAATGGGATTGGTTGGTATTGATGCAACTGTTTCAACTTATGAGCATCTTGTTAAGGGGTATTGTGGTATTGAGGATGTTGAATCAGCTGTTCTTGTTTACAAGGATATGCTTAGGAAGGATTTCAGACCTGATGCGTCGACGCTTGATATGGTGGTTAGGTTACTTTGTAATAAGGGTAGGGTTGAGGAAGCTATGAAGTTTTTGAGGAGTGGAGTTGGTAAGTTTGATTTGGTTCCAAAGGAGAAGAGCTATGAGGCCTTGATTAAGGGGTTTTGTTTTGAGGGGAGGATGGATGAGGCATTGAAGCTTCAGGCAGAGATGATAGGAAAAGGGTTTCAATTGAATTCGGAAATATATGAAGTTTTTATTGATGGGTATGTTAGACAAGGGAGTGAGGAAATGGCAGAAGCTTTGAGGAAAGAAATGCTGCAAACTCAGATGCATAGCTAA 1467 0.3995 MTIQVQVAKLLHQPLKPNPKKIHVTLFFSTSSSEQETLITTAVSILTNHRSKSRWNTLHTLYPNTLPSTDFSQITLHLKNKPHLALHFYQWTQSKSLCHHNLSSYSTIIHILARARLHSHAYNTIKTALINDDSSSTPLKLFEILVNSYRDCGSAPFVFDLLIEVCLESRKIESSIEISRMLLSRGISPKVATLNNLISRVCRKFGVDVGFEIYREFFRLDKEKDEISKRGYGFRGFRVVKPNVHSFNTLMLCCYQSGLVEKVEEIWNEMSEMGCDPNAYSYSLLIAAFCDGGRMEDCEKMWEEMRKKEIEADVVSYNTIIGGFCKIGDVGRAEEFYREMGLVGIDATVSTYEHLVKGYCGIEDVESAVLVYKDMLRKDFRPDASTLDMVVRLLCNKGRVEEAMKFLRSGVGKFDLVPKEKSYEALIKGFCFEGRMDEALKLQAEMIGKGFQLNSEIYEVFIDGYVRQGSEEMAEALRKEMLQTQMHS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2044 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Mtr4g2044 488 Pfam PPR repeat family 242 290 IPR002885 -
Mtr4g2044 488 Pfam PPR repeat family 421 466 IPR002885 -
Mtr4g2044 488 Pfam PPR repeat family 313 360 IPR002885 -
Mtr4g2044 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Mtr4g2044 488 Gene3D Tetratricopeptide repeat domain 296 406 IPR011990 GO:0005515
Mtr4g2044 488 Gene3D Tetratricopeptide repeat domain 69 222 IPR011990 GO:0005515
Mtr4g2044 488 Gene3D Tetratricopeptide repeat domain 223 295 IPR011990 GO:0005515
Mtr4g2044 488 Gene3D Tetratricopeptide repeat domain 409 487 IPR011990 GO:0005515
Mtr4g2044 488 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 4 486 - -
Mtr4g2044 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Mtr4g2044 488 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 4 486 - -
Mtr4g2044 488 Pfam PPR repeat 390 408 IPR002885 -
Mtr4g2044 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Mtr4g2044 488 TIGRFAM PPR: pentatricopeptide repeat domain 315 340 IPR002885 -
Mtr4g2044 488 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Mtr4g2044 488 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Mtr4g2044 488 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Mtr4g2044 488 TIGRFAM PPR: pentatricopeptide repeat domain 422 454 IPR002885 -
Mtr4g2044 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2044 Mtr-Chr4 33948075 33953307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2044 74 482 Glycosyltransferase AT1G05670 25.424 1.38e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2044 - - mtr:MTR_0026s0200 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2044 4 33948075 33953307 Mtr4g2044 4 33948075 33953307 ECH