Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2033 ATGACAAACACAAAAGGTGTAACCATGTTAGTAGAGAGAAACACCAATAATAACAATAGCACCAATAAAATACATAGACCAAAATTTGGTGCTTTTCTACACTCCGAACCCTCGTTATTTCACACCACCAACAACGACGATGATCAAGGCCGTATCAGCAGTGCCTCGGCCGCGAGTCCCCGAACATACTTCGGCGACAGCAGCAGCAGTAATAATGCTTCTCCTAATTACATGTTATCTCCATTGAACCAACAAACTTCTTCTCCTCTCAACAAATCACCATGGTTAATGCCATCATCAGAAGCAATCAACCTCTTCCAATACCACCACAGCCACCGCCACGACAACAATTACAACGACAGCTATTTCCCGGAAAATGGCCTCATCGGGTCACTAGCTCGCGAAGAAGGTCACATCTACTCCTTAGCCGTTTCCGGTGACATGTTATACACCGGTACCGATAGCAAAAACATAAGGGTGTGGAAAGAACTTAAAGATTATACCGGTTTTAAATCAAGTAGTGGTTTGGTCAAATCCATTGTTATATCCGAAGGAAACATCTTCACCGGTCATCAAGATGGAAAAATCAGGGTTTGGAAAATTTCTTCAAAAAATTCTAGAAATCATAAGCGTATTGGAAGCTTACCAACTTTCAAAGACTATGTCAAAAGCTCGATGAATCCAAAGAACTACGTAGAAGTCCGGCGACGGAGAAACACCGTGAAGGTGAAGCATTTCGACGCTGTTTCGAGTCTGAGTTTGGATCAAGAAGAAGGGTTGTTGTATTCAGGTTCGTGGGATAAAACTCTCAAAGTTTGGCGCGTTACGGATTTCAAGTGTATGGAATCGATTATAGCTCATGATGATGCAGTGAACGCTGTGGTTGCAGCATTTCAAACCTATGTTTTCACCGGCTCAGCCGATGGAACGGTGAAGATGTGGAGGAGAGACACCGACGGAAAAGGGAAGAAAACGAAGCATGTTTTGGAGAGGATTTTGTTGAAACAAGAAAACGCTGTGACGGCTTTGACGGTTAACGATTCATCAACGATTATTTATTGCGGTTCTTCTGATGGATTGGTTAACTTTTGGGAGCATCAACAGAAGAATAACCTCACTCACGGTGGCGTTTTAAAGGGACACAAACTCGCAGTCCTATGTCTAGCCGCTGCAGGGAACCTTGTTTTCAGTGGTTCCGCCGATAAGAATGTTTGCGTGTGGAGGCGCGACGAGAGAGGGGCTCACATTTGTCTTTCCGTTTTGACGGGACACACTGGTCCCGTCAAATGCATTGCCGTTGAAGAACACGAGGAGGAGGAGGACGATCGCGATGATCAACGGTGGATAGTTTATACCGGTAGTTTGGATAAGTCTGTTAAGGTCTGGCGCGTGTCTGAACACGCGCCAGAGTTGAGATTGATGCAAGGTTGGAATTCTCCAATTGCACCGGGATTGAATTATTCTTCCCCAGGAACAATCAATGTCAGCAACAATAGTAATAGAAGGCAGTTGCAAAAATGA 1521 0.4444 MTNTKGVTMLVERNTNNNNSTNKIHRPKFGAFLHSEPSLFHTTNNDDDQGRISSASAASPRTYFGDSSSSNNASPNYMLSPLNQQTSSPLNKSPWLMPSSEAINLFQYHHSHRHDNNYNDSYFPENGLIGSLAREEGHIYSLAVSGDMLYTGTDSKNIRVWKELKDYTGFKSSSGLVKSIVISEGNIFTGHQDGKIRVWKISSKNSRNHKRIGSLPTFKDYVKSSMNPKNYVEVRRRRNTVKVKHFDAVSSLSLDQEEGLLYSGSWDKTLKVWRVTDFKCMESIIAHDDAVNAVVAAFQTYVFTGSADGTVKMWRRDTDGKGKKTKHVLERILLKQENAVTALTVNDSSTIIYCGSSDGLVNFWEHQQKNNLTHGGVLKGHKLAVLCLAAAGNLVFSGSADKNVCVWRRDERGAHICLSVLTGHTGPVKCIAVEEHEEEEDDRDDQRWIVYTGSLDKSVKVWRVSEHAPELRLMQGWNSPIAPGLNYSSPGTINVSNNSNRRQLQK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2033 506 Gene3D - 233 326 IPR015943 GO:0005515
Mtr4g2033 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 275 - -
Mtr4g2033 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Mtr4g2033 506 CDD WD40 136 463 - -
Mtr4g2033 506 Gene3D - 123 224 IPR015943 GO:0005515
Mtr4g2033 506 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 17 478 - -
Mtr4g2033 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 407 IPR001680 GO:0005515
Mtr4g2033 506 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Mtr4g2033 506 Pfam WD domain, G-beta repeat 162 200 IPR001680 GO:0005515
Mtr4g2033 506 Pfam WD domain, G-beta repeat 376 407 IPR001680 GO:0005515
Mtr4g2033 506 Pfam WD domain, G-beta repeat 417 462 IPR001680 GO:0005515
Mtr4g2033 506 Pfam WD domain, G-beta repeat 245 273 IPR001680 GO:0005515
Mtr4g2033 506 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 478 IPR045182 -
Mtr4g2033 506 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Mtr4g2033 506 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Mtr4g2033 506 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Mtr4g2033 506 SUPERFAMILY WD40 repeat-like 131 471 IPR036322 GO:0005515
Mtr4g2033 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Mtr4g2033 506 Gene3D - 327 506 IPR015943 GO:0005515
Mtr4g2033 506 MobiDBLite consensus disorder prediction 40 70 - -
Mtr4g2033 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 314 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 236 274 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 125 162 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 163 200 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 277 315 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 326 365 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 414 463 IPR001680 GO:0005515
Mtr4g2033 506 SMART WD40_4 371 408 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2033 Mtr-Chr4 33844822 33847213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2033 243 462 Miscellaneous Gene Families AT5G08390 24.664 8.89e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2033 - - gmx:100790597 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2033 4 33844822 33847213 Mtr4g2033 4 33844822 33847213 ECH