Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2022 ATGAGGTGGTGGAAGAAAATGGTGTATGCTTCACTCTCGCCAGCTTTAACTCCCAAAAGGCCAAAACGGTTTTCACCTTCCCATTTTCCAGAAAGAAGCACTGCACTACAAGAATACGAGCAAGAGAAGAGCATTGGGACAGTGAATACTGCATCAATCACGAACAACACCGTTTTGTTCAGCAATTCACCAGTGCTTCAGCAGAGTGGCCTACCTCCTCTAGTCAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCAGCTTTCACTTTCCAGGACACAACAGAGGCCATGCCGCTCCTTCTTCGTTGACTCAACTCATTGGAGTAAGACCATATGCTCATGATTTGTCTAGCATTCCAGAGCTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAAGCACAAAGAGAAGCATCCAAACTGTTCGGATCATCAGAGACATGGTTTCTTGTCAACGGTACTACTTGTGGAGTCCAGGCAGCAATAATGGCAACCTGTTCACCGGGAGAATATCTGATTCTTCCTAGGAATTCTCATTTATCAGCTATATCTGCCATGGTTTTATCTGGTGCATCGCCTAAGTACATTATTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGCGTCACTCCATTACAGGTATTGAATGCTATCCAGGAACTAGAATTGGAAGGAAAGAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTACCATGGTGTTTGCAGTAACTTGAGTGATATTTCTGCTTTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGAGCACATCTAGGATTACATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACTGTACAATCTACTCACAAGGTTCTTTCCTCTCTTACTCAATCGTCTATGCTGCACATGTCGGGCGACATTGTAGATAAGGAAAAAATATCTAGGTGTCTCCAAACACTGCAAAGCACAAGTCCTAGTTACCTTCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGCTATTGTATTTAAACAAGCGATTGAATTAGCAAATGAAGCAAAGTTTTTGCTAAAACGAATCCCTGGCGTCTCAGTGCTTGAGAATTCAAGCTTTCCAAATTTTCCCGCATTTGATCCATTCCGGCTTACTGTAGGCTTTTGGGAGCTTGGTTTATCAGGTTACCAAGCAAATGAAATCTTATGCAGGGATTTTGGAATCGTCCGTGAGCTTGTTGGGTATAAATCTATCACTTATGTACTTAATCTTGGAACTTGTAGAGACCATGTCCAAAGGCTTTTATCGGGAGCAAAGTATCTAGCTGCAGTATATTCTTCCATTCAGCAACGTAAAGACAAAGTACTTACTGATCATGCACCCTTTGATGATATAATCATGAGCTTGACACCTAGAGATGCATTCTTTGCAAGTAAAAGAAAAGTAATGGTGAAAGAGAGCATTGGTAAGGTTTCGGGGGAGCTTGTATGTCCATACCCTCCAGGCATACCGGTATTGATCCCAGGCGAGGTTATTACTGAGAAAGCAGTCGATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCGATAGTTGTCTGCAATGTATAG 1668 0.4287 MRWWKKMVYASLSPALTPKRPKRFSPSHFPERSTALQEYEQEKSIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENAASFHFPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETWFLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDWDIAGGVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGAHLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTLQSTSPSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENSSFPNFPAFDPFRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLSGAKYLAAVYSSIQQRKDKVLTDHAPFDDIIMSLTPRDAFFASKRKVMVKESIGKVSGELVCPYPPGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLLSSIVVCNV* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2022 555 Gene3D - 72 351 IPR015421 GO:0003824
Mtr4g2022 555 Pfam Orn/Lys/Arg decarboxylase, major domain 72 371 IPR000310 GO:0003824
Mtr4g2022 555 CDD Orn_deC_like 73 370 IPR000310 GO:0003824
Mtr4g2022 555 ProSitePatterns Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 291 305 IPR000310 GO:0003824
Mtr4g2022 555 SUPERFAMILY PLP-dependent transferases 72 445 IPR015424 -
Mtr4g2022 555 Gene3D - 452 550 - -
Mtr4g2022 555 PANTHER ARGININE DECARBOXYLASE 47 554 - -
Mtr4g2022 555 PANTHER ARGININE DECARBOXYLASE 47 554 - -
Mtr4g2022 555 SUPERFAMILY Ornithine decarboxylase C-terminal domain 410 553 IPR036633 GO:0003824
Mtr4g2022 555 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 457 534 IPR008286 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2022 Mtr-Chr4 33736247 33743835 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2022 - - mtr:MTR_4g068240 1040.8