Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2021 ATGGTGTATTCTTCACTTCCACTTCCAGTACTCTCATTCCCTTTCATTCCCAAAAGGAGGCCAAAATGCTTTTCTGAAAGAAGCACTGCACTACAAGAATACGAGCAAGAGGAGAGCATTGGGACAGTGAATACTGCATCAATCACGAACAACACCGTTTTGTTCAGCAATTCACCAGTGCTTCAGCAGAGTGGCCTACCTCCTCTAGTCAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCAGCTTTCACTTTCCAGGACACAACAGAGGCCATGCCGCTCCTTCTTCGTTGACTCAACTCATTGGAGTAAGACCATATGCTCATGATTTGTCTAGCATTCCAGAGCTTGACAACCTCTTTTGTCCCCAAGGGCCCATATTAGAAGCACAAAGAGAAGCATCCAAACTGTTCGGATCATCAGAGACATGGTTTCTTGTCAACGGTACTACTTGTGGAGTCCAGGCAGCAATAATGGCAACCTGTTCACCGGGAGAATATCTGATTCTTCCTAGGAATTCTCATTTATCAGCTATATCTGCCATGGTTTTATCTGGTGCATCGCCTAAGTACATTATTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGCGTCACTCCATTACAGGTATTGAATGCTATCCAGGAACTAGAATTGGAAGGAAAGAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTACCATGGTGTTTGCAGTAACTTGAGTGATATTTCTGCTTTGTGTCATTCTCGTAAAATTCCTTTGATTGTTGATGAAGCTCATGGAGCACATCTAGGATTACATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACTGTACAATCTACTCACAAGGTTCTTTCCTCTCTTACTCAATCGTCTATGCTGCACATGTCGGGCGACATTGTAGATAAGGAAAAAATATCTAGGTGTCTCCAAACACTGCAAAGCACAAGTCCTAGTTACCTTCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTTAGTGAAAGCCCTGCTATTGTATTTAAACAAGCGATTGAATTAGCAAATGAAGCAAAGTTTTTGCTAAAACGAATCCCTGGCGTCTCAGTGCTTGAGAATTCAAGCTTTCCAAATTTTCCCGCATTTGATCCATTCCGGCTTACTGTAGGCTTTTGGGAGCTTGGTTTATCAGGTTACCAAGCAAATGAAATCTTATGCAGGGATTTTGGAATCGTCCGTGAGCTTGTTGGGTATAAATCTATCACTTATGTACTTAATCTTGGAACTTGTAGAGACCATGTCCAAAGGCTTTTATTGGGAGCAAAGCATCTAGCTGCAGTATATTCTTCCATTCAGCAACGTAAAGACAAAGTACTTACTGATCATGCACCCTTTGATGATATAATCATGAGCTTGACACCTAGAGATGCATTCTTTGCAAGTAAAAGAAAAGTAATGGTGAAAGAGAGCATTGGTAAGGTTTCGGGGGAGCTTATATGTCCATACCCTCCAGGCATACCGGTATTGATCCCAGGCGAGGTTATTACTGAGAAAGCAGTCGATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCCTCGATAGTTGTCTGCAATGTATAG 1653 0.4271 MVYSSLPLPVLSFPFIPKRRPKCFSERSTALQEYEQEESIGTVNTASITNNTVLFSNSPVLQQSGLPPLVSALKASAEENAASFHFPGHNRGHAAPSSLTQLIGVRPYAHDLSSIPELDNLFCPQGPILEAQREASKLFGSSETWFLVNGTTCGVQAAIMATCSPGEYLILPRNSHLSAISAMVLSGASPKYIIPDYKNDWDIAGGVTPLQVLNAIQELELEGKKAAAVFITSPTYHGVCSNLSDISALCHSRKIPLIVDEAHGAHLGLHSELPSSALQQGADLTVQSTHKVLSSLTQSSMLHMSGDIVDKEKISRCLQTLQSTSPSYLLLASLDAARAQLSESPAIVFKQAIELANEAKFLLKRIPGVSVLENSSFPNFPAFDPFRLTVGFWELGLSGYQANEILCRDFGIVRELVGYKSITYVLNLGTCRDHVQRLLLGAKHLAAVYSSIQQRKDKVLTDHAPFDDIIMSLTPRDAFFASKRKVMVKESIGKVSGELICPYPPGIPVLIPGEVITEKAVDYLLHVRSEGADISGASDPLLSSIVVCNV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2021 550 PANTHER ARGININE DECARBOXYLASE 42 549 - -
Mtr4g2021 550 PANTHER ARGININE DECARBOXYLASE 42 549 - -
Mtr4g2021 550 ProSitePatterns Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 286 300 IPR000310 GO:0003824
Mtr4g2021 550 Gene3D - 448 545 - -
Mtr4g2021 550 SUPERFAMILY Ornithine decarboxylase C-terminal domain 405 548 IPR036633 GO:0003824
Mtr4g2021 550 SUPERFAMILY PLP-dependent transferases 67 439 IPR015424 -
Mtr4g2021 550 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 451 529 IPR008286 GO:0003824
Mtr4g2021 550 CDD Orn_deC_like 68 365 IPR000310 GO:0003824
Mtr4g2021 550 Pfam Orn/Lys/Arg decarboxylase, major domain 67 366 IPR000310 GO:0003824
Mtr4g2021 550 Gene3D - 67 346 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2021 Mtr-Chr4 33730506 33734230 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2021 - - mtr:MTR_4g068240 1085.09