Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2008 ATGGGAATCACAGCTCATCTTCCTAAGCTCTCTCTTTTCCTTCTAATAATCACTTTTCATTCTTCATTTGCTGAAGTATTTTTCGAAGAGACATTCCAAGATGGGTGGAAGAGTCGTTGGGTTTTATCTGATTGGAAAAGGAGTGAAGGAAAAGCAGGTACCTTTAAGTATACTGCTGGAAAATGGCCTGCTGATCCTGATGACAAAGGTATTCAGACATATAATGATGCCAAGCATTTTGCCATATCTGCAAAGATACCAGAGTTGACCAATAAGAACAGAACCCTGGTGCTTCAGTATTCTATTAAATTTGAACAGGATATTGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTCAATCAGAAGAAATTTGGCGGTGATACTCCTTATAGTTTGATGTTTGGACCGGATCTATGTGGTACACAAACAAAGAAGCTCCATGTTATATTGTCATACCAGGGGCAGAATTATCCTATTAGAAAGGATCTGGAGTGTGAAACTGACAAATTAACTCATTTCTATACATTCATTCTGAGGCCTGATGCCTCCTACAGTGTCCTTGTCGATAATCGAGAAAGAGATTTTGGTAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCTAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAGAACCCTGATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCAGAAATTCCCGATCCGAAAGCCAAAAAGCCTGCTGACTGGGATGATGAAGACGATGGACTATGGAAGCCTTCCAAAATTCCTAATCCAGCATACAGAGGACCATGGAAACGAAAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGACTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTGCTGAAACCAATAAAGTATGTTGGCATTGAAGTGTGGCAGGTAAAGGCTGGTTCGATTTATGACAACATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGAAGAATATATGGTTAATAATAGGGAGGCTGAAAAGGAAGCTTTTGAAGAAGCGGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCAAAAAGGGCAAGAGAAGAGGGCGAAAAGAGGAGGAGAGAAAGGGGCAGTAGATATGGAGATAAGAGGCGCCGTAGGAGGCCGGATCCCCACGAATACATGGACGATTATGGACATGATGAACTTTGA 1263 0.4149 MGITAHLPKLSLFLLIITFHSSFAEVFFEETFQDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPADPDDKGIQTYNDAKHFAISAKIPELTNKNRTLVLQYSIKFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIRKDLECETDKLTHFYTFILRPDASYSVLVDNRERDFGSMYTDWDILPPRKIKDVKAKKPADWDDREYIENPDDVKPEGYDSIPAEIPDPKAKKPADWDDEDDGLWKPSKIPNPAYRGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSIYDNILICDDPQYAKQIVEEYMVNNREAEKEAFEEAEKERRAREEEEAKRAREEGEKRRRERGSRYGDKRRRRRPDPHEYMDDYGHDEL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2008 420 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 Pfam Calreticulin family 28 262 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 MobiDBLite consensus disorder prediction 225 241 - -
Mtr4g2008 420 Gene3D Calreticulin/calnexin, P domain 200 319 IPR009033 GO:0005509|GO:0005515
Mtr4g2008 420 MobiDBLite consensus disorder prediction 248 268 - -
Mtr4g2008 420 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Mtr4g2008 420 MobiDBLite consensus disorder prediction 225 270 - -
Mtr4g2008 420 Coils Coil 356 392 - -
Mtr4g2008 420 MobiDBLite consensus disorder prediction 359 420 - -
Mtr4g2008 420 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 223 IPR013320 -
Mtr4g2008 420 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PIRSF Calreticulin 5 419 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 ProSitePatterns Calreticulin family signature 1. 103 118 IPR018124 GO:0005509
Mtr4g2008 420 MobiDBLite consensus disorder prediction 401 420 - -
Mtr4g2008 420 PANTHER CALRETICULIN AND CALNEXIN 10 420 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Mtr4g2008 420 PANTHER CALRETICULIN-3 10 420 - -
Mtr4g2008 420 MobiDBLite consensus disorder prediction 359 394 - -
Mtr4g2008 420 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
Mtr4g2008 420 Gene3D - 25 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2008 Mtr-Chr4 33624356 33631609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2008 10 346 Miscellaneous Gene Families AT5G61790 34.091 4.69e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2008 K08057 - gmx:100802428 676.781