LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1976	ATGAGATATTTCCTATTTTCTCTCTTGTTGCCAACATTCATAATTACTTTCACACATGGTCAAGAAATAATTAAAACTACACCTCAAATAGGTACTTTGAATAGAAATGATTTCCCAGAAGGCTTTATATTTGGCACAGCATCTTCTGCATATCAATATGAAGGTGCAGCAAGTGAAGGTGGAAGAGGACCAAGTATTTGGGATACATTCACTCATAGATATCCTCAAAAAATCAGTGATGGAAACAATGGAGACGTTGCGGTTGACTCGTATCATCGATATAAGGAAGATGTTGGTATCATGAAGGATATGAACTTGGATGCATACAGATTTTCCATATCTTGGTCTAGAATACTCCCAGATGGGAAACTAAGTGGAGGAATTAATCAAGAAGGAATCGACTATTACAACAACCTCATCAATGAGTTGGTGGCAAATGGTTTACAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAAACTCTAGAAGATGAATATGGCGGTTTCTTAAGTCCTCTCATCATAAAAGACTTTCAAGACTATGCGGAACTTTGCTTCAAAACATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAACCATGGACTTACAGTCAAGATGGGTATGCAAATGGTGAAATGGCACCAGGTCGATGCTCTTCTTGGTTGAATCCAAATTGCACCGGCGGTGATTCTGGAACAGAACCTTATTTAGTTGCACATTATCAACTTCTAGCTCATGCAGCAGTTGTTAATTTGTACAAGACCAAGTATCAAGTCTCTCAAAAGGGTGTGATAGGTATAACATTGGTTATTAACTATTTTGTGCCACTCTCAGATAATAAACTTGATATAAAGGCTGCTGAACGAGCTACAGACTTTATGTTTGGATGGTTTATGGATCCCTTGGCCAATGGAGATTATCCAAAAACCATGAGAGCATTAGTCAGAACAAGGTTACCAAAGTTTACAAAAGAGCAATCTAAGCTAGTGAGTGGTTCATTTGATTTTATTGGCATAAACTATTACTCTTCATGCTATGCTTCTGATGCACCTCAGTTAAGCAATGGCAAACATAGCTACCTAACAGATTCACTCTCTCGTTTTTCATTCGAACGTGATGGAAAAACCATTGGTCTAAATGTTGCTTCAAATTGGTTGTATGTTTATCCAAGAGCAATTCGAGACTTTCTGATACAAGTTAAAGAAAAATACAACAACCCTTTAATTTATATTACTGAAAATGGTATTAATGAGTACGATGATCCATCATTATCGCTCGAGGAATCTCTTATGGATACTTATAGAGTTGATTATCATTATCGTCATTTATTCTATCTTAATGAGGCAATCAAGGCTGGTGTAAATGTAAAGGGATACTTTGCATGGTCTTTGTTGGACAATTTTGAATGGCATAAAGGTTATACTGTGAGATTTGGAATGACATTCGTAGATTACAAAAATGGTTTGAAAAGATATCAAAAGCTCTCGGGATTGTGGTTCCAGAATTTTCTCTCATCAGAGAACAAAAAAGTTTACATAGATTCCATTTAA	1560	0.3609	MRYFLFSLLLPTFIITFTHGQEIIKTTPQIGTLNRNDFPEGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHRYPQKISDGNNGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPDGKLSGGINQEGIDYYNNLINELVANGLQPFVTLFHWDLPQTLEDEYGGFLSPLIIKDFQDYAELCFKTFGDRVKHWITLNEPWTYSQDGYANGEMAPGRCSSWLNPNCTGGDSGTEPYLVAHYQLLAHAAVVNLYKTKYQVSQKGVIGITLVINYFVPLSDNKLDIKAAERATDFMFGWFMDPLANGDYPKTMRALVRTRLPKFTKEQSKLVSGSFDFIGINYYSSCYASDAPQLSNGKHSYLTDSLSRFSFERDGKTIGLNVASNWLYVYPRAIRDFLIQVKEKYNNPLIYITENGINEYDDPSLSLEESLMDTYRVDYHYRHLFYLNEAIKAGVNVKGYFAWSLLDNFEWHKGYTVRFGMTFVDYKNGLKRYQKLSGLWFQNFLSSENKKVYIDSI*	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1976	519	Pfam	Glycosyl hydrolase family 1	35	510	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	SUPERFAMILY	(Trans)glycosidases	29	508	IPR017853	-
	Mtr4g1976	519	PRINTS	Glycosyl hydrolase family 1 signature	336	350	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PRINTS	Glycosyl hydrolase family 1 signature	412	420	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PRINTS	Glycosyl hydrolase family 1 signature	435	446	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PRINTS	Glycosyl hydrolase family 1 signature	456	473	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PRINTS	Glycosyl hydrolase family 1 signature	480	492	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PANTHER	GLYCOSYL HYDROLASE	4	513	IPR001360	GO:0004553\|GO:0005975
	Mtr4g1976	519	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	4	513	-	-
	Mtr4g1976	519	ProSitePatterns	Glycosyl hydrolases family 1 active site.	412	420	IPR018120	-
	Mtr4g1976	519	Gene3D	Glycosidases	23	508	-	-
	Mtr4g1976	519	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	42	56	IPR033132	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1976	Mtr-Chr4	33310479	33312864	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g1976	1	512	Glycoside Hydrolase	AT5G44640	54.386	0.0	581

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g1976	-		K01188	gmx:100820528	857.055