Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1972 ATGACAGCTTTTGATTTCAACGTGCTTCTGTTACTATTCATTTTATCCATAACTCGTATCAATGCAGCTGTTAAACCTTTGCCTGTTCACGATGTTCCTTTTCTCAATCGGAGTAGTTTCCCGCCAGATTTTATTTTTGGAACTGCTTCCTCTGCATTTCAGTATGAAGGTGCAGCAAAAAAAGATGGAAAAGGACCAAGTATTTGGGATACTTTCGCTCATAAATATCCAGAAAAAATAAAAGATAGAAGTACTGGAGATGTAGCTGACGACTCATATAGTCGGTACAAGGAAGATGTTGGAATCATGAAGTATATGAATATGGATGCTTATAGATTCTCCATTTCTTGGTCTAGAGTCTTACCAAAAGGAAAGCTTAGTGGAGGTGTAAACCATGGAGGAATAAACTACTACAACAACCTCATCGATGAACTATTGGCTAATGGTGTGCAACCATATGTGACACTTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGCGGTTTTTTGAGTCCTCGCATTGTAAATGATTTTAAGGACTATGCTGATCTTTGCTTCAAGGAATTTGGTGATAGGGTGAAACGTTGGACTACTTTGAATGAACCAAGGAGTGTGAGTAAGAATGGATACGCAGTCGGAAGGTTTGCACCGGGTCGATGTTCAGATTGGTTAAAACTGAATTGCACAGGAGGAGATTCTGGGACAGAACCATATCTGACTTCGCACTACCAACTTCTTGCTCATTCTGCAGCTGTAAAATTGTACAAGACCAAGTATCAGGCATCTCAAAAGGGTTTAATAGGGATTACCATAAACTCTGATTGGTTTGTGCCGGTCTCTAACGAGAAATCAGATCGTGATGCTGCCCAACGAGCCCTCGATTTCATGTTTGGATGGTATATGGATCCACTTACAAAAGGTGAGTATCCAAAAAGCATGCGATCTATGGTGGGAAACCGGCTACCAAAGTTCTCCAAAGAAGAATCAGCGCAACTTAGAGGGTCCTTTGATTTTCTTGGCCTAAACTATTACTCATCCTTTTATGCTGCTAATGCACCTCAGTTACGCGGTGCTAAACCAGCCCAACAAACTGATAATCTTGTTAATGTTACAAATCAATATAATGGCAAGGCTCTTGGTCCAATGGCTGCTTCCAGCTGGTTGTGCATTTATCCACGAGGATTTCGACAATTGTTGCTTTACATCAAGAGGCAGTACAATAACCCTGTAATTTACATTACTGAAAATGGTTATGATGAGTTCAATGATCCAACACTGTCGCTTGAAGAATCCCTTATAGATACTCTCAGAATTGATTACTTTTATCGTCATCTTTATTATCTTCAAACTGCAATCAAGGATGGTGTGAATGTAAAGGGATATTTTGCATGGTCATTGTTGGATAACATGGAATGGGACTCTGGCTACACAGTGCGATTCGGACTCGTCTTTGTGGATTTTAAAAATGGTGTGAAAAGACACCCAAAACTCTCGGCGCAATGGTTCAAAAATTTCCTCAAAAAGTCTTAG 1539 0.4029 MTAFDFNVLLLLFILSITRINAAVKPLPVHDVPFLNRSSFPPDFIFGTASSAFQYEGAAKKDGKGPSIWDTFAHKYPEKIKDRSTGDVADDSYSRYKEDVGIMKYMNMDAYRFSISWSRVLPKGKLSGGVNHGGINYYNNLIDELLANGVQPYVTLFHWDVPQALEDEYGGFLSPRIVNDFKDYADLCFKEFGDRVKRWTTLNEPRSVSKNGYAVGRFAPGRCSDWLKLNCTGGDSGTEPYLTSHYQLLAHSAAVKLYKTKYQASQKGLIGITINSDWFVPVSNEKSDRDAAQRALDFMFGWYMDPLTKGEYPKSMRSMVGNRLPKFSKEESAQLRGSFDFLGLNYYSSFYAANAPQLRGAKPAQQTDNLVNVTNQYNGKALGPMAASSWLCIYPRGFRQLLLYIKRQYNNPVIYITENGYDEFNDPTLSLEESLIDTLRIDYFYRHLYYLQTAIKDGVNVKGYFAWSLLDNMEWDSGYTVRFGLVFVDFKNGVKRHPKLSAQWFKNFLKKS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1972 512 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 44 58 IPR033132 -
Mtr4g1972 512 Gene3D Glycosidases 25 511 - -
Mtr4g1972 512 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 27 511 - -
Mtr4g1972 512 PRINTS Glycosyl hydrolase family 1 signature 338 352 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 Pfam Glycosyl hydrolase family 1 38 511 IPR001360 GO:0004553|GO:0005975
Mtr4g1972 512 SUPERFAMILY (Trans)glycosidases 28 510 IPR017853 -
Mtr4g1972 512 PANTHER GLYCOSYL HYDROLASE 27 511 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1972 Mtr-Chr4 33182269 33186800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1972 1 505 Glycoside Hydrolase AT5G42260 54.150 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1972 - K01188 gmx:100801874 891.338