Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1967 ATGCTCATGCAACAAATTAGTTTAAAGCCAAATTGTCTCATCTTGAACAACCCATGTCTCCATGGTATTGGAAGTAACCAAACATGTTTTCATGTTGGATCGTCAAGGCCTTTGTTCACAAACCAAAAGAAACAAAGGAGGTTGTTTAAGAGGAATGAGTGTAGCAAAATAAAAGCTGTGGCTGTGAGTGATGAAGAACTTATAGAACAAACATCATTAAAAGTAAAAGCCATAGTAACTGTTCAACCAACAGTTGGAGGGCTTTTCTCAGAAATGGCTCTAGAAAGAGGGCTTGATGACATAACAGATTTGTTGGGTAAATCAATTCTCTTGGAGTTTGTTAGCTCCGAGCTGGATCCCGAGACAAAATTGGAGAAGGAAAGAATCAAAGGTTACGTCCACCAAACGCATAGATCAGTGGAAGAGATTAAATATGAAGCTGAATTTGAAGTACCACAAAGTTTTGGAGATATTGGTGCAGTTCTTGTGGAAAATGAGCATAGAAGGGAAATGTTTATAAAGAACATTGTTCTTGATGGCTTTCTCACTGGTCCTGTGAATTTTTCTTGTGAATCATGGGTTCATTCCAAGCATGACAACCCTGATGATAAGAGGGTTATTTTTTCCAACAAGTCATATTTACCATCTGAAACACCAGAAGGATTGATAAGGTTAAGAGAAGAGGAACTGAAAACTTTACGAGGCAATGGACAAGGCGAACGCAAGAGCTTTGATCGAATATACGATTACGATGTGTATAATGACCTCGGTGATCCAGACAGCGATCCCGAACTCAAGCGACCTGTTCTTGGTGGCAAAGAACATCCATATCCTAGGCGTTGTAGAACCGGAAGACCTCGTTGTGATACAGATCCGTTGTCTGAGAAAAGAAGTAACAATGTCTATGTTCCGAGGGACGAATCCTTCTCAGAATTAAAGCAACTCTCGTTTTCAGCAAATACCTTACAATCGGCTTTCCATGCGCTTTTACCGGTCGTGAAAACAGCTGTAATTGACAAGAATCTTGGATTCCCTCTTTTCTCAGCCATAGATGACCTTTTCAATGAAGGATTTAACTTGCCTCCTCAAGCTGAAAAAGGGTTTCTTGCGTCTGTGTTGCCAAGGTTGGTCAGGCTTGTCAACGAGGCTAGGAATGACATTCTCCGTTTCGAGACTCCCGCCACAATGGACAAGGACAGATTCTTTTGGTTTAGGGATGAAGAATTTGGAAGACAGACTATAGCAGGTCTTAATCCTTGTTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTTGACCCTAAAATTTATGGTCCTGCTGAATCTGCAATAACCACTGAAATGATTGAGCAACAAATCAGAGGATATGCTACCGTTGAAGAGGCGATAAAACAGAAGAAGTTGTTCATCCTAGACTACTACGATTTTTTCTTGCCGTTGGTCGAGGAAGTTAGAAAACTCGAAGGCACAACATTGTATGGATCAAGGACGTTGTTCTTTCTGAATGAAGATAGCACATTGAGACCGGTGGCGATCGAGCTAGCTAGGCCGCCAATTGGCGGAAAGCCAGAATGGAGGGAAGTCTTCACACCTGCTTGGCATTCAACTGGTGTTTGGCTTTGGAGGCTTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGCTACCATCAACTTGTTAGTCACTGGTTGAGAACTCATTGTGCCACAGAGCCTTACATCATAGCAACAAACAGACAACTAAGTGCAATGCATCCAATCTACAAACTATTACTTCCACATTTTCGATACACAATGGAAATCAATGCACTTGCACGCGAAGCACTTATAAATGCAGATGGAATAATTGAGAGTAGTTTCACTCCTAAACAACTCTCTCTCTTGGTAAGTTCAATAGCCTATGATAAGCATTGGCAATTTGACTTGCAAGCCCTTCCAAATGACCTCATCCATAGAGGACTAGCAGAAAAAGATCCAAATGCCCCACATGGCCTAAAACTAGCAATAGAAGATTACCCTTATGCAAATGATGGTCTTGTTCTTTGGGATACGATCAAATCTTGGGTCACTGATTATGTTAACCATTACTACAACAATGAGTCGAGAAATGTTGAGTCGGATAAAGAATTACAAGCATGGTGGGATGAGATTATAAATGTTGGTCACGGCGACAAAAAAGACGAACCATGGTGGCCTAATTTGAAAACAAACGATGATCTTGTTGAAATAGTGACGACCATTGTTTGGATTACATCGGGGCATCATGCTGCGGTGAATTTTGGTCAGTATACTTATGCTGGATATTTTCCTAATAGACCGGCCATTGCGCGAAACAACATGCCTACAGAAGACCCTTCAGACAGCGAATGGGAACTTTTCTTCGAGAAACCAGAAGTGACATTGTTGAAGTGTTTCCCTTCACAAATTCAAGCAATGACGGTGATGACCGTGTTGGATATTTTGTCAAGTCATTCGCCGGATGAGGAATATCTTGGAGAAACGATTGAACCGGCATGGCAAGAGGAACCAATGATTAAAGCTGCTTTTGAAAAGTTTAAAGGGAGGTTGATGGAGCTTGAAGGTATAGTAGATGAGAGGAATGCTAATATGAATTTCAGGAATAGAAATGGTGCTGGAATTTTGCCTTATGAGCTTTTGAAGCCAACATCAGAGCCTGGTGTAACAGGAAAAGGTGTTCCATATAGTGTCTCTATTTGA 2721 0.4138 MLMQQISLKPNCLILNNPCLHGIGSNQTCFHVGSSRPLFTNQKKQRRLFKRNECSKIKAVAVSDEELIEQTSLKVKAIVTVQPTVGGLFSEMALERGLDDITDLLGKSILLEFVSSELDPETKLEKERIKGYVHQTHRSVEEIKYEAEFEVPQSFGDIGAVLVENEHRREMFIKNIVLDGFLTGPVNFSCESWVHSKHDNPDDKRVIFSNKSYLPSETPEGLIRLREEELKTLRGNGQGERKSFDRIYDYDVYNDLGDPDSDPELKRPVLGGKEHPYPRRCRTGRPRCDTDPLSEKRSNNVYVPRDESFSELKQLSFSANTLQSAFHALLPVVKTAVIDKNLGFPLFSAIDDLFNEGFNLPPQAEKGFLASVLPRLVRLVNEARNDILRFETPATMDKDRFFWFRDEEFGRQTIAGLNPCCIQLVTEWPLKSKLDPKIYGPAESAITTEMIEQQIRGYATVEEAIKQKKLFILDYYDFFLPLVEEVRKLEGTTLYGSRTLFFLNEDSTLRPVAIELARPPIGGKPEWREVFTPAWHSTGVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYKLLLPHFRYTMEINALAREALINADGIIESSFTPKQLSLLVSSIAYDKHWQFDLQALPNDLIHRGLAEKDPNAPHGLKLAIEDYPYANDGLVLWDTIKSWVTDYVNHYYNNESRNVESDKELQAWWDEIINVGHGDKKDEPWWPNLKTNDDLVEIVTTIVWITSGHHAAVNFGQYTYAGYFPNRPAIARNNMPTEDPSDSEWELFFEKPEVTLLKCFPSQIQAMTVMTVLDILSSHSPDEEYLGETIEPAWQEEPMIKAAFEKFKGRLMELEGIVDERNANMNFRNRNGAGILPYELLKPTSEPGVTGKGVPYSVSI* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 178 196 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 205 226 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 244 260 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 276 295 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 341 362 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 388 404 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 427 446 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 495 519 IPR001246 GO:0016491
Mtr4g1967 906 PRINTS Plant lipoxygenase signature 819 833 IPR001246 GO:0016491
Mtr4g1967 906 PANTHER LIPOXYGENASE 20 904 IPR000907 GO:0016702|GO:0046872
Mtr4g1967 906 MobiDBLite consensus disorder prediction 258 297 - -
Mtr4g1967 906 Gene3D - 555 904 - -
Mtr4g1967 906 SUPERFAMILY Lipoxigenase 214 906 IPR036226 -
Mtr4g1967 906 MobiDBLite consensus disorder prediction 258 294 - -
Mtr4g1967 906 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 74 213 IPR036392 GO:0005515
Mtr4g1967 906 Gene3D - 420 554 - -
Mtr4g1967 906 ProSitePatterns Lipoxygenases iron-binding region signature 2. 585 595 IPR020834 GO:0016702|GO:0046872
Mtr4g1967 906 PRINTS Lipoxygenase signature 540 557 IPR013819 GO:0016702|GO:0046872
Mtr4g1967 906 PRINTS Lipoxygenase signature 558 575 IPR013819 GO:0016702|GO:0046872
Mtr4g1967 906 PRINTS Lipoxygenase signature 578 598 IPR013819 GO:0016702|GO:0046872
Mtr4g1967 906 CDD PLAT_LH2 73 210 IPR042057 -
Mtr4g1967 906 Gene3D - 232 330 - -
Mtr4g1967 906 Pfam Lipoxygenase 222 889 IPR013819 GO:0016702|GO:0046872
Mtr4g1967 906 Pfam PLAT/LH2 domain 142 208 IPR001024 GO:0005515
Mtr4g1967 906 Gene3D - 332 419 IPR027433 -
Mtr4g1967 906 PANTHER LIPOXYGENASE 20 904 - -
Mtr4g1967 906 ProSitePatterns Lipoxygenases iron-binding region signature 1. 558 572 IPR020833 GO:0016702|GO:0046872
Mtr4g1967 906 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 212 906 IPR013819 GO:0016702|GO:0046872
Mtr4g1967 906 SMART LH2_4 73 210 IPR001024 GO:0005515
Mtr4g1967 906 ProSiteProfiles PLAT domain profile. 88 208 IPR001024 GO:0005515
Mtr4g1967 906 Gene3D PLAT/LH2 domain 71 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1967 Mtr-Chr4 33098037 33106309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1967 151 906 Acyl Lipid Metabolism Gene Families AT3G45140 59.079 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1967 K00454 - gmx:100787202 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1967 4 33098037 33106309 Mtr4g1967 4 33098037 33106309 ECH