Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1907 ATGCATGCTTTTGTAAGAACTACTCAATCCCTGAAAATTCCCACAAAAAATGCCATCTTCAACCACCATTTTCTCCGATCAGAACCCGAATCATACGCTAAACTCATTGAAACATACACTCACTCACGATCATTACAACAAGGAAAGAAGCTTCACGCGCTTCTAACAACCAACGGCTACGTCCGTTTCAACCTCATAGCATCCAACCTCATTACCTTATACACAACATGTGGCCAACTCTCCATTGCTCGTAAACTGTTCGACAAAATTCCCCAAACAAATATTCACCGTTGGATCGCCCTCATTGCCACATGTGCTCGATGTGGCTTCCATGATCACGCTCTCGAGGTTTTCTCTGAGATGCAAACTCTCAACGACCAAAAGTCCAATAGCGTATTCGTCATTCCTAGTGTTCTTAAAGCTTGTGGCCATGTTGGTGATAGAATTTATGGAGAGCAAGTGCATTGTTTGGTTTTGAAGTGTTCGTTTGAGATCGATGCTTTTGTTTCGAGCGCGTTGATTGTTATGTATTCTAAGTGTGGTGAAGTTAGGGATGCACGTAAGGTGTTTGATGGAATGGTTGTGAAGGATTTGGTAGCAATGAATGCTGTTGTTTCTGGATATGCTCAACAAGGGCTTCCGAATGAGGCATTGAGTTTGGTTGAAAATATGAAGTTGATGGGTGTGAACCCAAATGTGGTGACTTGGAATGCTTTGATATCTGGGTTTGCGCAGAAATGTGACCGGGAAATGGTGTCTGAGATTTTTAGGCTGATGAATGAAGATCGGGTTGAGCCTGATGTGGTGTCATGGACTTCTGTTTTATCTGGTTTTGTGCAGAATTTTCGTAATGAGGAAGCTTTTGATGCGTTTAAGAAAATGCTGCTTCTTGGTTTTTGTCCAACTTCAGCTACGATCAGCGCGCTTCTGCCAGCTTGTGCTACTGAGGCAAGAGTGAGATTTGGGAAGGAGATTCATGGTTATGCTTTGGTGATTGGTGTGGAGGATGATTTGTATGTGAGGAGTGCTTTGGTTGACATGTATGCAAAATGTGGTTTCATTTCGGAAGCCAGGACACTGTTTTATAAGATGCCGGAGAAGAACACGGTGACAATGAACTCTATGATTTTCGGTTATGCGAATCACGGGTGCTGCGAAGAAGCTATTGAGCTCTTCAATCAGATGGAGATGGAAGGGGTGCCCAAGCTAGATCATTTAACTTTCACGGCAGCTCTCACGGCATGTAGTCATGTTGGAGATATTGAACTTGGGCAGAGGCTGTTCAAGATTATGCAAGAGAAATATTGTATTGAGCCACGATTGGAGCATTATGCATGCATGGTGGATCTATTTGGTCGAGCAGGGAAACTAGAGGAAGCGTATGGCATAATCAAGTCAATGCCGGTTAAACCTGATTTGTTTGTGTGGGGTGCATTATTGGCTGCTTGTAGAAATCATGGGCATGTGGAACTTGCAGAAGTGGCTGCTAAGCATTTGTCAGAATTAGAACCCGAGAGTGCTGGGAATCGTCTTCTGTTGTCCAGCTTGTATGCCGATGCTGGAACATGGGGAAAGGTTGAGCGGATCAAGAGAAGGATAAAGAAAGGGAAACTTAGAAAACTTCAAGGATTGAGTTGGATTGATAATGTATAG 1653 0.4344 MHAFVRTTQSLKIPTKNAIFNHHFLRSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLSWIDNV* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1907 550 Gene3D Tetratricopeptide repeat domain 340 549 IPR011990 GO:0005515
Mtr4g1907 550 Gene3D Tetratricopeptide repeat domain 100 258 IPR011990 GO:0005515
Mtr4g1907 550 Pfam PPR repeat 171 196 IPR002885 -
Mtr4g1907 550 Pfam PPR repeat 444 468 IPR002885 -
Mtr4g1907 550 Pfam PPR repeat 98 123 IPR002885 -
Mtr4g1907 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 194 - -
Mtr4g1907 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 549 - -
Mtr4g1907 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 243 - -
Mtr4g1907 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Mtr4g1907 550 Pfam Pentatricopeptide repeat domain 219 280 IPR002885 -
Mtr4g1907 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Mtr4g1907 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Mtr4g1907 550 Gene3D Tetratricopeptide repeat domain 259 328 IPR011990 GO:0005515
Mtr4g1907 550 Pfam PPR repeat family 367 416 IPR002885 -
Mtr4g1907 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Mtr4g1907 550 Pfam E motif 486 548 IPR046848 -
Mtr4g1907 550 SUPERFAMILY TPR-like 329 507 IPR011990 GO:0005515
Mtr4g1907 550 PANTHER OS03G0271300 PROTEIN 26 194 - -
Mtr4g1907 550 PANTHER OS03G0271300 PROTEIN 244 549 - -
Mtr4g1907 550 PANTHER OS03G0271300 PROTEIN 196 243 - -
Mtr4g1907 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 400 IPR002885 -
Mtr4g1907 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Mtr4g1907 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Mtr4g1907 550 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1907 Mtr-Chr4 32302293 32304415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1907 32 548 Glycoside Hydrolase AT3G49170 31.835 2.93e-83 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1907 - - gmx:100790576 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1907 4 32302293 32304415 Mtr4g1907 4 32302293 32304415 ECH