Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1871 ATGGGTCAAGGTGGTCTTAGTTGTAGAGGTAGTCATGAACATGGACTCTTTCGTGCTGTCCAACATGGTGACCTCAAAACTGTTTCTACTCTTTTACAGACTCACCCTTCTCTTCTCAATCGTACTACCGTTTATGATCATCATTCCCCTCTTCATATTGCTGCTGCCAATGGTCAGATCCAGGTTTTATCTAGGCTTTTAGATGGATCTACAAATCCAGATGTGTTGAATCGACAAAAGCAGACCCCACTTATGTTGGCAGCAATGCATGGAAAGATTGATTGTGTGGAAAAGTTGCTTGAAGCTGGTGCTAATGTTTTAATGTTTGATGTGTGTCATGGAAGAACTTGCTTGCATTATGCTGCTTACTATGGTCATTCTTCTTGCCTTAAGGCAATACTTTCTGCTGCTCGATCTAGTCCTGTGGCTGCTTCTTGGGGGTTTGCACGGTTTGTGAATATTAGAGACGGTAGAGGTGCTACACCGTTGCATTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTGCACATTCTATTGTGTAGTGGAGCTCTTGTTTGTGCTTCAACTAGCAGATATGGATGTCCCGGGAGTACTCCACTTCATCTAGCAGCTAAAGGAGGATCTCTCGATTGCATCCGCGAATTATTAGCATGGGGTGCAGATCGTCTCCAACGTGATGCATCTGGGCGGATACCATATGTGGTTGCTTTGAAGTACAAGCATGGAGCATGTGCAGCATTGCTAAATCTTTCATCTGCACAGCCTCTTGTATGGCCATCATCATTGAAGATAATCAGCGAGCTTAATCCAGAGGCTAAAGTTTTATTAGAGCAGGCCTTGTTGGACGCGAACAGGGAAAGGGAGAAAAACATATTGAAAGGCAGTCCTTACTCTCTTCCATCTCCACACTCTGATCGAATAGATGACAATATATCTGAGGTTAGCGAGACGGAATTATGCTGCATCTGCTTTGAGCAGGTGTGTACAATTGAGGTCCAAGACTGTGGCCACCAGATGTGTGCACAATGCACACTAACACTCTGCTGTCACAACAAGGCCAACACTTCAACTTCGCATCCCATCCCACCCATCTGTCCATTCTGTCGAAGCGCTATATCTAAACTGATGGTTATCAAGGTAGAAACTCACGAAGACATGGATCTAGACGGCGCTGATACCACTTGTTTCAAGCCAAGCAAGTCAAGGAAATTTCGTAACATGAACGAGGGTAGCAGCAGCAGTTTCAAGGGATTGTCCAATGTGAATTCATTCGGAAAAATGAGCGGCCGTAGTTCCGGGATGATTGCTTCCGAAAATGAATACGTTGATGATAAGCCACAATGA 1344 0.4487 MGQGGLSCRGSHEHGLFRAVQHGDLKTVSTLLQTHPSLLNRTTVYDHHSPLHIAAANGQIQVLSRLLDGSTNPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAARSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKYKHGACAALLNLSSAQPLVWPSSLKIISELNPEAKVLLEQALLDANREREKNILKGSPYSLPSPHSDRIDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKANTSTSHPIPPICPFCRSAISKLMVIKVETHEDMDLDGADTTCFKPSKSRKFRNMNEGSSSSFKGLSNVNSFGKMSGRSSGMIASENEYVDDKPQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1871 447 MobiDBLite consensus disorder prediction 426 447 - -
Mtr4g1871 447 Pfam Ankyrin repeats (many copies) 196 233 IPR002110 GO:0005515
Mtr4g1871 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Mtr4g1871 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 438 - -
Mtr4g1871 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 438 - -
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Mtr4g1871 447 SUPERFAMILY RING/U-box 319 375 - -
Mtr4g1871 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Mtr4g1871 447 SUPERFAMILY Ankyrin repeat 16 248 IPR036770 -
Mtr4g1871 447 Gene3D - 149 198 IPR036770 -
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Mtr4g1871 447 Gene3D - 10 147 IPR036770 -
Mtr4g1871 447 Pfam Ankyrin repeats (3 copies) 113 183 IPR002110 GO:0005515
Mtr4g1871 447 Pfam Ankyrin repeats (3 copies) 16 110 IPR002110 GO:0005515
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 195 224 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 79 108 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 46 75 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 158 187 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 113 143 IPR002110 GO:0005515
Mtr4g1871 447 SMART ANK_2a 11 40 IPR002110 GO:0005515
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Mtr4g1871 447 Gene3D - 199 253 IPR036770 -
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Mtr4g1871 447 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1871 Mtr-Chr4 31857838 31861643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1871 13 330 Miscellaneous Gene Families AT5G60070 26.488 2.36e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1871 - - gmx:100800611 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1871 4 31857838 31861643 Mtr4g1871 4 31857838 31861643 ECH
Mtr2g3336 2 47454959 47458158 Mtr4g1871 4 31857838 31861643 PCT