Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1833 ATGGATATCGATCTTTCTCCTCAGGTTGCCAAGAAAGTTTACGGTGGCGATGGTGGATCGTACTACGCTTGGTCACCTTCTGAGCTTCCTATGTTGCGTGAAGGTAACATTGGTGCTGCCAAGTTAGCGCTTCAGAAGAACGGTTTTGCTGTTCCGAGATACTCTGATTCTTCCAAGGTTGCTTATGTTCTTCAAGGAAGTGGAGTTGCTGGAATTGTGCTACCTGAATCAGAAGAGAAGGTTGTTGCAATTAAGGAGGGTGATGCTTTAGCACTTCCCTTTGGTGTTGTGACATGGTGGTATAACAAAGATGACACTGAGTTGGTTGTTCTGTTCCTCGGCGATACTTCTAAAGCACACAAGGCTGGTGAGTTTACTGATTTTTTCCTGACTGGTCCTAATGGAATCTTTACCGGATTTTCAACTGAATTTGTCGGAAGAGCTTGGGACTTGGATGAGAACAATGTGAAGACACTCGTTGGAAAGCAATCCGCTAAAGGGATTGTGAAGCTTGACGGAAAAATCAGCCTTCCTCAGCCTAAAGAGGAACATAAGAAAGGCATGGCTTTGAATTGTCTGGAGGCACCATTGGATGTTGATATTAAGAATGGTGGAAGGGTTGTTGTCTTGAACACCAAGAACCTTCCTTTGGTTGGTGAGGTTGGTTTAGGAGCTGATCTTGTGAGGATTGATGGAAGATCCATGTGCTCTCCTGGATTCTCTTGCGATTCTGCTTTGCAGGTTACTTACATTGTTAGGGGAAGCGGCCGTGTTCAGGTTGTTGGTGTTGATGGTAAGAGAGTCTTGGAGACCACTTTGAAGGCTGGAGATTTGTTCATTGTGCCGAGGTTTTTCGTTGTCTCAAAGATTGCTAACAATGATGGAATGGAGTGGTTCTCTATCATCACTACCCCTAATCCTGTATTTACACACATGGCTGGAAGTTCTTCGGTGTGGAAGGCGCTATCACCAACAGTTCTGCAGGCTGCTTTCAATGTTGATCCAGAAGTTGAGAAGCTCTTCCGTTCAAAGAGGACCGCTGATGCCATTTTCTTCCCTCCTCCAAATTAA 1071 0.45 MDIDLSPQVAKKVYGGDGGSYYAWSPSELPMLREGNIGAAKLALQKNGFAVPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKEGDALALPFGVVTWWYNKDDTELVVLFLGDTSKAHKAGEFTDFFLTGPNGIFTGFSTEFVGRAWDLDENNVKTLVGKQSAKGIVKLDGKISLPQPKEEHKKGMALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRIDGRSMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGKRVLETTLKAGDLFIVPRFFVVSKIANNDGMEWFSIITTPNPVFTHMAGSSSVWKALSPTVLQAAFNVDPEVEKLFRSKRTADAIFFPPPN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1833 356 CDD cupin_11S_legumin_N 4 173 - -
Mtr4g1833 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Mtr4g1833 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Mtr4g1833 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Mtr4g1833 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Mtr4g1833 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Mtr4g1833 356 Pfam Cupin 10 157 IPR006045 -
Mtr4g1833 356 Pfam Cupin 196 338 IPR006045 -
Mtr4g1833 356 PANTHER - 2 347 - -
Mtr4g1833 356 CDD cupin_11S_legumin_C 198 353 - -
Mtr4g1833 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Mtr4g1833 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Mtr4g1833 356 SMART Cupin_1_3 195 339 IPR006045 -
Mtr4g1833 356 SMART Cupin_1_3 3 157 IPR006045 -
Mtr4g1833 356 Gene3D Jelly Rolls 4 191 IPR014710 -
Mtr4g1833 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1833 Mtr-Chr4 31426124 31428954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1833 35 351 Miscellaneous Gene Families AT2G18540 21.526 1.75e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1833 - - gmx:100795038 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1833 4 31426124 31428954 Mtr4g1833 4 31426124 31428954 ECH