Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1827 ATGTATCACAGAGCCAAATCGATTAACCATAATCTATTATCCCATTATCATCACTCCACTAAAAACCATGCAAAAACCTTAATCCACACACACTCACATCAACCTCAAAACCAAAAACCAAAACCAAACCATCACAAACGCAAACACATTCCCTTCATAACCGAAATCAAACAAATCGAAACCTCAGAACAAGCTTTATCTCTCTTTCACCATTACAACCAACTCGGATACAAACACTATTACCCTTCTTACGCCGCATTACTCTACAAACTCGCCCGTTCTAAAAACTTCCATGCAGTAGAAACCATCCTCACACAAATGAAAAACACCGATATTCAATGCAACGAAACGGTTTTCATCGCGCTTTTTCAGCATTATGGACCAGTAAAAGCCGTTGAACTCTTTCGGGCAATGCCGAAATTCAACTGTGCACGTACATTGCAGTCTTTTAACGCACTTCTGAATATTTTAGTTGATCATGGTATGTTTTGTGAGGCTAATGATGCTTTTGAGAGGTGTTATGAAATGGGTTTTCGTCCGAATACCGTTACTTTTAATATTATGATGAAGGGTTGGTTGAAAAAAGGTGAATGGGAGAATGCGTGTAAGGTGTTTGATGAAATGCTTGAGAGAAAAGTGCAGCCTAGTGTTGTTAGTTATAATAGTTTGATTGGGTTTTTGTCGAGGAAGGGTGATTTGGATAAAGCGATGAGGTTGGTTGAGGATATGAGACGGAAAGGGAAACGTGCGAATGGGGTGACGTACGCGCTTTTGATGGAGGGTTTGTGTAGTTTGGGAAAGTATGAGGAAGCTAAGAAGTTGATGTTTGATATGGCGTATCGTGGGTGTAAACCTCAGCTTGTGAATTTTTCTGTTTTGATGAATGATCTTGGGAAGAGAGGGAAGATTGATGAGGCGATGGTTTTGTTTCGGGAGATGAGAAAGAGACGGCTTAAGCCGGATGTTGTGACGTATAACGTGTTTGTGAATTATCTTTGTAAGGAAGGGAAGACGGCGGAAGCTTATAAGATGTTGGTTGAGATGCAGATTAGTGGTTGTGAGCCGAATGCGGCCACATATAGGATGTTGCTTGATGGTTTGTGTCGGAATGGGGATTTTGAGAGTGGGTTGAGTGTTTTGAATTTGATGTTTGCGAGTAGACATTGCCCGCTATCGGATACGTTTAATTGTTTGGTTGTTGGGTTATTGAAGTCTGGGAATATTGATGGTGGATACTTTGTTTTGGAAGAGATGGTGAAGAGAAAAGTAGATTTTGATTTGGAGAGCTGGGAAGCTGTGATAAAGTATGCTTGCAGTGAGGATGATAAGAGTGGCAGTATGCTTACGAATATACTTACATGTATGTCCGTCTAA 1374 0.4061 MYHRAKSINHNLLSHYHHSTKNHAKTLIHTHSHQPQNQKPKPNHHKRKHIPFITEIKQIETSEQALSLFHHYNQLGYKHYYPSYAALLYKLARSKNFHAVETILTQMKNTDIQCNETVFIALFQHYGPVKAVELFRAMPKFNCARTLQSFNALLNILVDHGMFCEANDAFERCYEMGFRPNTVTFNIMMKGWLKKGEWENACKVFDEMLERKVQPSVVSYNSLIGFLSRKGDLDKAMRLVEDMRRKGKRANGVTYALLMEGLCSLGKYEEAKKLMFDMAYRGCKPQLVNFSVLMNDLGKRGKIDEAMVLFREMRKRRLKPDVVTYNVFVNYLCKEGKTAEAYKMLVEMQISGCEPNAATYRMLLDGLCRNGDFESGLSVLNLMFASRHCPLSDTFNCLVVGLLKSGNIDGGYFVLEEMVKRKVDFDLESWEAVIKYACSEDDKSGSMLTNILTCMSV* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1827 457 Gene3D Tetratricopeptide repeat domain 17 126 IPR011990 GO:0005515
Mtr4g1827 457 SUPERFAMILY TPR-like 65 342 IPR011990 GO:0005515
Mtr4g1827 457 Gene3D Tetratricopeptide repeat domain 279 348 IPR011990 GO:0005515
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Mtr4g1827 457 Gene3D Tetratricopeptide repeat domain 349 456 IPR011990 GO:0005515
Mtr4g1827 457 Gene3D Tetratricopeptide repeat domain 127 278 IPR011990 GO:0005515
Mtr4g1827 457 PANTHER OS05G0548600 PROTEIN 14 454 - -
Mtr4g1827 457 Pfam PPR repeat family 180 224 IPR002885 -
Mtr4g1827 457 Pfam PPR repeat family 320 369 IPR002885 -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 290 322 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 359 390 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 218 247 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 253 285 IPR002885 -
Mtr4g1827 457 TIGRFAM PPR: pentatricopeptide repeat domain 394 423 IPR002885 -
Mtr4g1827 457 Pfam PPR repeat 394 422 IPR002885 -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Mtr4g1827 457 Pfam Pentatricopeptide repeat domain 238 300 IPR002885 -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Mtr4g1827 457 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 14 454 - -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Mtr4g1827 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1827 Mtr-Chr4 31373074 31376322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1827 185 446 Miscellaneous Gene Families AT4G11690 24.444 4.42e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1827 - - gmx:100776556 639.417