Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1803 ATGAATAAACCAAAAAGCGACGGTGTAATCTTCACTAAGGAACCTTACATCGAAGATACAGGACCACGCAAAATTGCAGGAATTACGTTTTCGACGCTATCGGATACAGATATTATCAACATTGGTGAAACTCAAGTGTGGAAAGATTCCTACTATGATGCATTTCGAAAAGCCGTTGATGGCGGCGTGTTGGATCCTCGGCTGGGCCCTGCTAATAAGAGTAGTCCTTCCTGTGCAACATGCCACGGGAATTTTACTGATTGTCAAGGGCACTACGGATACTTACCACTTGCCCAACCTGTTTTCAATGTCGGATTCTTAAGTACAATTGTAAAAATACTGAAGTGCATTTGTAAGAAATGTGCTCGTATTCTCCTTCCTGAAAAAGACTGTAAAAAATGGTTGGTGAAAATGAGAAACCCCAAATTGGATGGGCTGCAGAAGATGAATATGCTTGAATCTATAATGAAAAAGTTTAAATCTGCTAAACAAATAGAGTGCCCAAGATGTGGATATATCAATGGTGCAGTAAAGCACAATAAGCCTACCCTGAGCATTGTTCATGACTGCTCGAAGGCTAACAATGATGATGTTGCAGAGCTCCAATCAGCTCTTCCTCATATAAACAATTATAGGGCATGCAACGACTTGACTTCTCGACCTCTTAACCCTGTCGTGGTTCTTGAATTGTTTAAAAAGATGCATGGCGAGGACTGTAAATTACTTTACATTGCTGAAAAACCAGAGAATCTCATCATAACAAACATTGCTGTGCCACCTATAGTTATCCGACCTTCAGTCATGATGGATGGACAGAGTAATGAAAATGACATAACAGAGAAGCTAAAGAAAATAATCCAGGCAAATGCTATCATGCAACAAGAGTCAGTCGAGACACAAAAATATCAGGATGGTTATCTTATGCTTCAATTCGAGGTTGCTCAATACATAAATAGTGATGTTAAAGGTGGACCATACAATCCTCAAATGAGCAAGTCTTTAACCGGTTTTATTCAGCGCATTAAAGGGAAGCAAGGTCGTTTTCGTAGCAATCTGTCTGGAAAACGTGTTGAGTATACTGGCAGGACAGTTATTTCACCTGATCCTAATCTAAAGATTACTGAGGTTGCAATACCCATCCATATGGCTCGCATTTTGACTTATCCTGAGCGTGTTACACATCACAACATAGAAAAGTTGAGACAATGTGTGAGAAATGGTCCCGATAAGTATCCTGGTGCAAGGATGCTTAAAGAGGCTGGAGGTAACTCATGGAATTTGAGAGTTTCTAGTAGGACGCGCCGTGCCGATGAACTGAAATTTGGTGATATTGTTGAACGCCATATAGAAGATGGAGATATTGTTATTTTCAACAGGCAACCAAGCTTGCACCGAATGTCTATGATGAGTCATAGGGCAAGGGTTATGCCTTGGAGAACATTGAGATTTAATGAATCCGTATGTAATCCATATAATGCTGATTTTGATGGCGACGAAATGAACCTACATGTTCCACAGACTGAGGAGGCTCGAACAGAGGCTCTTTTGTTGATGACGGTGCAAAACAATTTGTGCACACCAAAAAATGGGGAAATTCTAGTTGCCTCTACGCAAGACTTCTTAACCTCTTCCTTTCTCATAACTAGGAAAGATACTTTTTATGATCGTTCTTCATTTTCACTTATTTGCTCATACATGGGGGATGGTATGGATCCTATTGATTTGCCAACTCCTGCAATTATTAAGCCAGTTGAACTCTGGAGTGGTAAACAGTTATTTAGCATTTTATTGCGCCCACATGCAAATGTGAGGGTCTATGTGAACCTCACTGTAAAGGAGAAAAATTACGGCTCAAAGCTTGATGATAGGGAAAGAGAATTCAAAACAATGTGCCCGGATGATGGATTTGTTTATTTTCGCAATAGTGAGTTAATCTCCGGACAACTTGGAAAGGTGACTTTAGGAAATGGCAACAAGGATGGACTTTTCTCTGTGCTACTAAGAGATTATAAATCAGATGCTGCTGCTTCTTGCATGAACCGTCTTGCTAAATTAAGTGCTCGGTGGATAGGTAATCATGGGTTCTCGATAGGCATTGATGACGTCCAACCTAAAGATAAACTGATCAAAGGGAAAGAAGAAACGATCGATGATGGTTACAAGAAGTGTGATGGTTTTATAGAAGCTTTCAATAGTGGAAAGCTAGAACTCTTACCTGGTTGTGATGCTGCTCAGACATTAGAGTCTAAGATATTTGGTACATTAAATGGCTTACGTGATACAACAGGGAAGGTTTGCATGAAAACATTACACTGGCGGAATAGTCCATTGATCATGTCGCAGTGTGGCTCCAAAGGATCTCCTATTAATATCTGTCAAATGGTTGCCTGTGTTGGTCAACAGTCGGTTGGAGGTTGTCGTGCTACTAATGGGTTCATAGATCGGAATCTTCCTCATTTCCCTAAACACGCGAACACCCCTGATGCTAAAGGTTTTGTTAAAGATTCCTTTTTCACTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGAGAGAAGGGCTCGTTGATACAGCGGTCAAAACTGCAGACACTGGATATATGTCTCGTAGATTAATGAAAGCTCTAGAAGACTTATTTTTACATTATGATTACACCGTAAGAGATACCAATGGTAGTATTGTTCAGTTTTGTTATGGTGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGGTTATTTCTCAGAAGCAAGGCCATATGTCCCGCTGATGGCAATGATGTAATCTTATCTTCTTCAGATGTGTGTAAAGTACTTCACGAGAAGCTTTCAGAAGTTGGCATGTCTATGTTAGTGGAGAAGAATGCTTCAGACAAGGATATAACATCAGACATAGGCTTCTCTGCTGATTTTCTAAAATCTCTACAATCTTTTGTCGAAAAAAATACAACATTAACAAAAAGTATCGGTGAGGACGATTCTAGTAATTTGAAGAACTTTCTTCCAAAGATATCTGGAATCAGTCGCAGACAACTAGAGGTTTTTCTAGATATTTGTCTATCACGTTATCGTTTAAAAAAAATCGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGCATCATAGAAATAATAAATGGAGCATCCAATATTAAGACACCGATCATTACTGCAATACTTGAGAGGGATGATAATGCAAAAACTGCAAAGATAGTGAAAGGATGCATAGAAAAAACAAATTTAGGCCAGGTTGCGAAGAGTATTAAAGTTGTTTACTCTAACAAATTAGCGGCAGTTTTTATCTCGCTGGACATGGGCATAATCGAAAAGGCAGGACTGAATATAGATGCCAATATTGTGAAAGAATCAATTTTGCAGACTGGAAAACTGAAGTTGAAGCCAGAGAATGTTAAGATTTTGGATATTAAAAAGCTTCAAGTGGAACCCCAAGGGTCTAGCCGAAGTGAACTCCTTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCAGTTGTAGTGAAGGGAGTTAAAACTGTCGAACGAACTGTCCTAGAAATAAAAAAAATAAAAACAAATAGTGGTAAAGAATCTGAGAAGTACACCTTACTGGCGGAAGGCAAGGGCCTTAAAGAGGTTATGGGAATTGAAGGGGTTGATGGACATAAAACTGTTACTAATCATATCATTGAATTGATGAACATTCTGGGAATTGAGGCTGCCAGATATGGTATCATTGATCAGATACAGTATACAATGAAACAGCATGGAATGAGTATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGGTCAAGTCCTTGGAATGACAAGACATGGAATTCAAAAGATGGGCAGAAGTGCATTAATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTCGATGCATCCTTGCGTGGGAAGGGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCTATTCATATAGGCACTGGAATGATCGAGGTCAAACAAAGGTTGGAACCTCCGGTGTTGCTTCAAGGAGCCAAGCCTATTCTATCTAGTGTTTGA 4203 0.3964 MNKPKSDGVIFTKEPYIEDTGPRKIAGITFSTLSDTDIINIGETQVWKDSYYDAFRKAVDGGVLDPRLGPANKSSPSCATCHGNFTDCQGHYGYLPLAQPVFNVGFLSTIVKILKCICKKCARILLPEKDCKKWLVKMRNPKLDGLQKMNMLESIMKKFKSAKQIECPRCGYINGAVKHNKPTLSIVHDCSKANNDDVAELQSALPHINNYRACNDLTSRPLNPVVVLELFKKMHGEDCKLLYIAEKPENLIITNIAVPPIVIRPSVMMDGQSNENDITEKLKKIIQANAIMQQESVETQKYQDGYLMLQFEVAQYINSDVKGGPYNPQMSKSLTGFIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLKEAGGNSWNLRVSSRTRRADELKFGDIVERHIEDGDIVIFNRQPSLHRMSMMSHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSSFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKNYGSKLDDREREFKTMCPDDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKSDAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKDKLIKGKEETIDDGYKKCDGFIEAFNSGKLELLPGCDAAQTLESKIFGTLNGLRDTTGKVCMKTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRATNGFIDRNLPHFPKHANTPDAKGFVKDSFFTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGSIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPADGNDVILSSSDVCKVLHEKLSEVGMSMLVEKNASDKDITSDIGFSADFLKSLQSFVEKNTTLTKSIGEDDSSNLKNFLPKISGISRRQLEVFLDICLSRYRLKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILERDDNAKTAKIVKGCIEKTNLGQVAKSIKVVYSNKLAAVFISLDMGIIEKAGLNIDANIVKESILQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVLEIKKIKTNSGKESEKYTLLAEGKGLKEVMGIEGVDGHKTVTNHIIELMNILGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEVKQRLEPPVLLQGAKPILSSV* 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1803 1400 SMART rpolaneu7 249 548 IPR006592 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1384 IPR045867 GO:0003899|GO:0006351
Mtr4g1803 1400 Pfam RNA polymerase Rpb1, domain 4 729 833 IPR007083 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 Gene3D - 345 527 - -
Mtr4g1803 1400 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1383 - -
Mtr4g1803 1400 Pfam RNA polymerase Rpb1, domain 2 354 520 IPR000722 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 Pfam RNA polymerase Rpb1, domain 5 840 1331 IPR007081 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 CDD RNAP_III_RPC1_N 33 890 IPR035697 -
Mtr4g1803 1400 Gene3D - 702 819 IPR038120 -
Mtr4g1803 1400 Gene3D RNA polymerase ii 387 447 - -
Mtr4g1803 1400 Gene3D - 880 930 - -
Mtr4g1803 1400 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1384 - -
Mtr4g1803 1400 Pfam RNA polymerase Rpb1, domain 1 23 352 IPR007080 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 Pfam RNA polymerase Rpb1, domain 3 523 702 IPR007066 GO:0003677|GO:0003899|GO:0006351
Mtr4g1803 1400 Gene3D RNA polymerase Rpb1, domain 3 528 701 IPR042102 -
Mtr4g1803 1400 Gene3D RNA polymerase II, clamp domain 15 138 IPR044893 -
Mtr4g1803 1400 Gene3D - 1333 1378 - -
Mtr4g1803 1400 Gene3D - 820 878 - -
Mtr4g1803 1400 CDD RNAP_III_Rpc1_C 1033 1378 IPR035698 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1803 Mtr-Chr4 31028276 31055972 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1803 K03018 - gmx:100811292 1998.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1803 4 31028276 31055972 Mtr4g1803 4 31028276 31055972 ECH