Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1788 ATGAGTGATGAAGGAGAAAGGACTTGCCCTCTCTGTGCCGAAGAGATGGATTTGACGGATCAGCAGTTGAAACCTTGCAGATGTGGTTATGAGATCTGTGTATGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACGGATGGGCGATGCCCTGCGTGTCGTTCTCCTTATGACAAGGAAAAGATTGTTGGGACGGCGGCAAAATGTGAAAGACTGCTGAATGAAATGAATTTGGAGAAAAAGGTGAAGAATCAGAAAGCCAAGTCTAAATCTTCTGATGGACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGGATCTGGCAGATGAAGATCTTCTCCAGAAGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGGACGGCAGCTGGTGTCATTCAACAGTTTCCTAATGAAACTTGCAGTGTATATATTACTTATTCAAGCGAAGAGGAATCAATTCGGTGTATTCAAAATGTACACGGATTTATTTTGGAGGGCAGACCTTTAAGGGCCTGTTTTGGAACGACAAAATATTGTCATGCATGGCTCCGAAATGCGCCTTGCATCAACCCAGATTGTCTATATTTGCACGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATTTCCGCTTACACCAGAAGTCGAGTTCAACAGATCACCGGTGTCACAAACAGTATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCCCTAGATGATTGGACCAATAATTCTACAGAAAAGCCCATTGTTAAAAGTGCACCAACTAACTCTGTCTGCGCAGTAAGAAGTTCACCTCCAAATGGAATTAATGGGAGACATGTATCTCTTCCCACCAGTGCTGCTTGGGGCACACAGACTACAAGTTGTCATCCCCCTGTTGGAGGTTTATCACATCCCTCTGTGTTGTCCAAGCCAAAACCTGATACAGTCAACAGCATGCATCCCTCTGTGCTGTCCAAGCCAAAACCTGATACAGTCAACAGCGCACTTGCCTTTTCTACTGCTGTTACGGGGACAATTCAGGCTTCTGCAGCACAATGTGATGGTTCAAGGAGGCCACTATTGAATGATGAGAGTCGTAATACAATACCAAGGGTGAAAAGTGAAATGCCGAAATCTGTTAAACAATATATTAGCATGGACAGTCTGGCTAGTGCAAGTGAGAAAACTTCAGCTTGTGATGTTTCTCCTGTGCCTGTCAATTTAAAGAACGAGTTGTCTTCTCGGCCATTGTCACGAGATAGTGACAGAGGCAATTGTACTATAGCAAACACATTAAATGCTACTAACATTACTGGACATTCTTTTAGCACCGGTCCAGAGGAAGCAGTGTCTGCTACCAATGAAGTGATACGGAATTTGTCCAGTGAGTTCTCCTCAATTAACATTGATAGAAGTACCTCAAATGAACTCTGCCGTATAACTAAACCTAGTAGCCTGCCTACTGAAAATGCCTTGACTAAATCTCCTCAAATTCAAGAAGGATCACATTATGATGTTGACAGATTTAAAGACCCGATAACAACCAATACAGCCGGTAAAACTTCCACATCAGTTAATGGTGTTTTTAGTCCAAAGGAACAGTGTGGAGGGATATTGGATTCTCAATCTCAGGTAGTATCGGATGCAGCTGATATCGAAGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCTTTCTTATTTGCCTAAGGCAACAAATTTCCTTAATATATCAAAACTCTCTAGCCCTTGTCTAATGCAGTATGGTGAACCTTGTACTGCTGGAAATGATGGTTCTCTATCTTCCAATGATAGAGTTCGGGATGAATCTATTTTACATTCGTCTAGCATGTTATGTAATGGCTATCCTGAGAAATTGATCAGTGGCAGCTCTAATGGTTTACTTCGTGATGAAAGAAACCGGCAAAGCATTGGAAGGTTAGTTGGTGATGCTGTTGATGCTGGGTGTGATGCTGCAATTGATAAGGGCGAAAGTAGCATAATCTCAAATATTCTGTCCCTCGATTTTGATCCCTGGGATGACTCCTTAACATCACCGCATAATATAGTGAAGTTATTGGGTGACAATACTGATAGCCAGCCTTGTCCTTTAAAAACATCTAGTTCTAGGAATGTTCAAAGTAACAATCAGTCAAGGTTCTCTTTTGCAAGGCAGGAAGAATCTAAAATTCAATCTTTTGATGTGCATCCGTCTTATACTGTCAGCCAGCAACAGCCTAAGAGTCACATACTCAATCAGAATCTGGCAGAAAGAGATTTTTATATGGAGAAATTGGGCATAGCAAATGGCTTTCCTACCAGTAACTTTGAGGAAGCTGGTGTCCATTCCATTGCTTCTTCCAATAAGCTTTCTGCTAATTCAAGATCACAAGTTTCAGCTCCACCAGGATTTTCAATTCCAAGCAGGCTTCCACCTCCTGGTTTTTCTTTGCATGAGAGATCAGACCAGATTTTTGACTCCCTATCTGGTAATTCATTACTTGATCATTCTTCCTATTTGAGAAATTCACCTCAGACACTCTCAGCTGGAAATATTGGTGGCACAGGCGAAATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAGGGGAGACTTCAAGGTGCACAGAACAGTCAATCACTGGACGTACGGTCAAATTTCATGCCACAATTAAATTATTTCGATAATGAAGCTAGACTACAACTCCTAATGCAAAGATCTCTAGCACAGCAGCAAAACCTTAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCATATGGTGTTTCTTCAAGGTTGGATCAGTCTCAAGTCAGTAATCTAGCCCCTTATCCTCAGCTGTCTATGCAGCAGTCTACAAATGCAATCTTGTCAAATGGCCAATGGAATGGGTGGAATGAGGTGCAGAGTGGGAATGGTCTGGGTGTGGCCGAACTTTTGAGGAATGAAAGACTTGGATTTAACAAGTTTTACCCAGGATATGATGATTCAAAATATCGGATGCCAAACTCTGGAGATATCTACAACAGAACATTTGGGATGTGA 3132 0.4183 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTAAKCERLLNEMNLEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLDLADEDLLQKREYFGQYGKVLKVSMSRTAAGVIQQFPNETCSVYITYSSEEESIRCIQNVHGFILEGRPLRACFGTTKYCHAWLRNAPCINPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGVTNSMQRRSGNVLPPPLDDWTNNSTEKPIVKSAPTNSVCAVRSSPPNGINGRHVSLPTSAAWGTQTTSCHPPVGGLSHPSVLSKPKPDTVNSMHPSVLSKPKPDTVNSALAFSTAVTGTIQASAAQCDGSRRPLLNDESRNTIPRVKSEMPKSVKQYISMDSLASASEKTSACDVSPVPVNLKNELSSRPLSRDSDRGNCTIANTLNATNITGHSFSTGPEEAVSATNEVIRNLSSEFSSINIDRSTSNELCRITKPSSLPTENALTKSPQIQEGSHYDVDRFKDPITTNTAGKTSTSVNGVFSPKEQCGGILDSQSQVVSDAADIEDDVTSFDNQRLKDPEVCLSYLPKATNFLNISKLSSPCLMQYGEPCTAGNDGSLSSNDRVRDESILHSSSMLCNGYPEKLISGSSNGLLRDERNRQSIGRLVGDAVDAGCDAAIDKGESSIISNILSLDFDPWDDSLTSPHNIVKLLGDNTDSQPCPLKTSSSRNVQSNNQSRFSFARQEESKIQSFDVHPSYTVSQQQPKSHILNQNLAERDFYMEKLGIANGFPTSNFEEAGVHSIASSNKLSANSRSQVSAPPGFSIPSRLPPPGFSLHERSDQIFDSLSGNSLLDHSSYLRNSPQTLSAGNIGGTGEIEFMDPAILAVGKGRLQGAQNSQSLDVRSNFMPQLNYFDNEARLQLLMQRSLAQQQNLRFSEIGNTFSQLGDSYGVSSRLDQSQVSNLAPYPQLSMQQSTNAILSNGQWNGWNEVQSGNGLGVAELLRNERLGFNKFYPGYDDSKYRMPNSGDIYNRTFGM* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1788 1043 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Mtr4g1788 1043 SMART rrm2_1 111 192 IPR003954 GO:0003676
Mtr4g1788 1043 MobiDBLite consensus disorder prediction 721 748 - -
Mtr4g1788 1043 CDD RRM_CNOT4 105 204 IPR034261 -
Mtr4g1788 1043 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Mtr4g1788 1043 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Mtr4g1788 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Mtr4g1788 1043 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Mtr4g1788 1043 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 342 1043 - -
Mtr4g1788 1043 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 340 - -
Mtr4g1788 1043 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 340 IPR039780 GO:0004842|GO:0030014
Mtr4g1788 1043 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 342 1043 IPR039780 GO:0004842|GO:0030014
Mtr4g1788 1043 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Mtr4g1788 1043 Gene3D - 111 192 IPR012677 -
Mtr4g1788 1043 SUPERFAMILY RING/U-box 3 66 - -
Mtr4g1788 1043 MobiDBLite consensus disorder prediction 251 274 - -
Mtr4g1788 1043 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Mtr4g1788 1043 MobiDBLite consensus disorder prediction 815 842 - -
Mtr4g1788 1043 SMART rrm1_1 111 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1788 Mtr-Chr4 30805439 30813731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1788 K10643 - gmx:100813427 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1788 4 30805439 30813731 Mtr4g1788 4 30805439 30813731 ECH
Mtr4g1788 4 30805439 30813731 Mtr2g3194 2 45760395 45769358 PCT