Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1766 ATGTTATCTTTTCGTAGAAATTGCTTGAAATATTGTACCCACTTCAATAGAAGAAACACCTCAAATCAAAATCCATGCTTCCACAAATTTCCTACACTATTTCATCTCAATGACCCAATTCAGATAAATTCACTTATTAGCTTTAATTCTTATCATTATTATTCAACCAAAACCCCTTCAAGATCTTACAGAAGACGAGCTCGAAACCGGTTTTTAAAAGCCAACAAACCTGTTTTAGACCAAGAAAAGTTTCAATTTGCACAATCCCAACTCCTCCCACGGTTTACACCGGAGGAATTACGCAATGTTATTGCGAATCAACGCGACCCGTTAGTTTGTTTAGAGCTTTTTCATTGGGCGTCTCACCAGCCGAGGTTTCGCCATAATGAGTCGAGTTTTCATGTTACCATTAAGAAGCTTGGTGATGCTAAAATGTATCAAGAAATGGATGATGTTGTGAATCAGTTGCTTGCTGTTCGTTCGATTGGTAATGAGGCGTTGTTTAATATGATTATATATTATTTTACTGAGGCGCGGAAGTTGACTAGAGCCGTTATTGTGTTTAAGCATATGAAGTGTAGTAGAAATCCGAATTTTGGGTTTAGGCCTTCGATTAGAACGTATAATATTCTTTTTGGTGCGTTTTTGAGTAGAGGATATAATACCCATATAAACCTAGTGTATATGGAGACTATGAGATGTTTGTTCAGGCAAATGGTAAACGAACATATAGAACCTGATATTTTTTCGTTGAATTCGATGATAAAAGGTTACGTGCTTTCTCTTCATGTTAACGATGCGTTGAGGATATTTCATCAGATGGGTGTGGTTTATGATTGTAAACCCAATTCTTTAACTTATGATTACTTGATTCATGGGTTGTGTGCCAAAGGAAGAACAGAGAATGCCAAAGAATTGTATCATGAAATGAAGGCCAAAGGTTTTGTTCCGAGTAGTAAATCTTATAATTCGCTTGTCAATTCTTTGGCACTTGTTGGAGATGTTGAGGAGGCTGTAAATTATCTATGGGAGATGACTGAAAAGCAAAAATCAGTTGATTTTATTACATACAGGACTGTACTTGATGAGATATGTAGACGCGGAAGAGTTCAGGAGGCAATGAGGTTTCTGCAAGAGTTGCAAGAAAAGGACCTTGTTGATGGGCATACTTACAGGAAGCTTCTTTATGTGCTTGAAGATGATTATGGAGATTCAGAAACCAGAATTGATTCAGGTTCAGCTTTAATCTCACCTTGA 1257 0.3699 MLSFRRNCLKYCTHFNRRNTSNQNPCFHKFPTLFHLNDPIQINSLISFNSYHYYSTKTPSRSYRRRARNRFLKANKPVLDQEKFQFAQSQLLPRFTPEELRNVIANQRDPLVCLELFHWASHQPRFRHNESSFHVTIKKLGDAKMYQEMDDVVNQLLAVRSIGNEALFNMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFRPSIRTYNILFGAFLSRGYNTHINLVYMETMRCLFRQMVNEHIEPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCKPNSLTYDYLIHGLCAKGRTENAKELYHEMKAKGFVPSSKSYNSLVNSLALVGDVEEAVNYLWEMTEKQKSVDFITYRTVLDEICRRGRVQEAMRFLQELQEKDLVDGHTYRKLLYVLEDDYGDSETRIDSGSALISP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1766 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Mtr4g1766 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Mtr4g1766 418 TIGRFAM PPR: pentatricopeptide repeat domain 286 318 IPR002885 -
Mtr4g1766 418 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Mtr4g1766 418 TIGRFAM PPR: pentatricopeptide repeat domain 355 385 IPR002885 -
Mtr4g1766 418 Pfam PPR repeat 355 384 IPR002885 -
Mtr4g1766 418 Pfam PPR repeat 250 274 IPR002885 -
Mtr4g1766 418 Pfam PPR repeat family 282 330 IPR002885 -
Mtr4g1766 418 Gene3D Tetratricopeptide repeat domain 69 221 IPR011990 GO:0005515
Mtr4g1766 418 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 35 410 - -
Mtr4g1766 418 Gene3D Tetratricopeptide repeat domain 222 408 IPR011990 GO:0005515
Mtr4g1766 418 PANTHER ATPASE EXPRESSION PROTEIN 3 35 410 - -
Mtr4g1766 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1766 Mtr-Chr4 30496231 30498829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1766 180 395 Glycosyltransferase AT1G05670 26.126 7.49e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1766 - - gmx:102666460 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1766 4 30496231 30498829 Mtr4g1766 4 30496231 30498829 ECH