Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1688 ATGGTTTCCGACGCTAGCAAGAAGAAAGCTGCTCAGAAGAAAGCCGCCGCCGCCGCTAAACGTGGTGGTAAGGCTGCCGCCGCTGCTTCTTCCAAAGCCGCTGATAAGGTTGCTGATAAAATCAGTGATATGAAGATTTCCGATCGGACTTGTACTGGTGTTCTTTGTTCTCATCCTCTTTCTAGAGATATTCGGATAGAGTCTTTATCGGTTACTTTCCATGGACATGATCTCATTGTTGATTCTGAATTGGAGTTAAATTATGGAAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCAACCCTGCTTACTGCAATAGGAATGCGGGAACTTCCGATTCCTGAGCACATGGATATTCATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAACCTGTGATGAAGAAAGGTTGCAATTGGAGAAAGAAGCTGAAACTTTGGCTGCTCAGGATGATGGAGGTGGTGAAGCCCTTGAACGTATTTATGAACGTTTGGACGCCCTAGATGCATCAACCGCAGAAAAACGTGCTGCTGAAATCTTAGATGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACTCGTGATTTTTCTGGAGGATGGAGAATGAGAATTTCATTAGCACGAGCTTTATTTATGAACCCCACCATTCTTCTACTCGATGAACCAACTAATCATCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATATCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGTAAGAAGCTGAAGATTTACACTGGCAACTATGATCAATATGTTCAGACCCGTGGTGACTTGGAAGAGAACCAGATGAAGCAGTACAAGTGGGAACAGGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAAAGTAAGGAAAAAACATTGGCAAAAATGGAACGAGGTGGACTCACAGAGAAGGTAGTCAGAGATCAAGTTTTAGTATTCCGCTTCACTGATGTGGGAAAACTTCCTCCTCCTGTTCTTCAGTTTTCTGAAGTAAGTTTTGGTTACACTCCTGAGAATCTCATCTACAAAAACATCGACTTTGGGGTTGACTTAGACTCTAGGATTGCTCTAGTTGGACCGAATGGTGCTGGAAAGAGTACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTCAAGCGTCATAACCATCTTCGAATTGCTCAATATCATCAGCACTTGGCGGAGAAATTGGACTTGGATGTGCCTGCCCTTCAGTTTATGATGAGTGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAAAAGAGTCGAGTAATCTTTGCATGGTTAGCTTATAGACAGCCTCAATTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCTCTGGCTGAGGCATTGAATGAGTGGGATGGCGGCATGGTGCTTGTTAGCCACGACTTTAGGCTCATTAATCAGGTGGCGCATGAGATATGGGTGTGTGCTGATCAGAAAGTGACCAGATGGGAGGGTGACATTATGGATTTCAAGAAGCATCTGAAGGCGAAGGCAGGGATATTGGACTGA 1773 0.4388 MVSDASKKKAAQKKAAAAAKRGGKAAAAASSKAADKVADKISDMKISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIHHLSREIEASDMSALEAVITCDEERLQLEKEAETLAAQDDGGGEALERIYERLDALDASTAEKRAAEILDGLGFDKQMQAKKTRDFSGGWRMRISLARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMSEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTRWEGDIMDFKKHLKAKAGILD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1688 590 PANTHER - 1 590 - -
Mtr4g1688 590 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 590 IPR003439 GO:0005524
Mtr4g1688 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 570 IPR027417 -
Mtr4g1688 590 Gene3D - 340 587 IPR027417 -
Mtr4g1688 590 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524
Mtr4g1688 590 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 304 IPR003439 GO:0005524
Mtr4g1688 590 Pfam ABC transporter 82 236 IPR003439 GO:0005524
Mtr4g1688 590 Pfam ABC transporter 391 522 IPR003439 GO:0005524
Mtr4g1688 590 CDD ABCF_EF-3 64 281 - -
Mtr4g1688 590 Gene3D - 64 328 IPR027417 -
Mtr4g1688 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 296 IPR027417 -
Mtr4g1688 590 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 590 - -
Mtr4g1688 590 CDD ABCF_EF-3 375 567 - -
Mtr4g1688 590 Pfam ABC transporter 275 347 IPR032781 -
Mtr4g1688 590 SMART AAA_5 88 290 IPR003593 -
Mtr4g1688 590 SMART AAA_5 400 566 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1688 Mtr-Chr4 29383584 29388042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1688 375 568 Calmodulin-binding Proteins AT2G36910 25.664 3.88e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1688 K06185 - gmx:100809491 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1688 4 29383584 29388042 Mtr4g1688 4 29383584 29388042 ECH
Mtr2g3279 2 46878349 46882725 Mtr4g1688 4 29383584 29388042 PCT