Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1644 ATGGCACCGATTCCACCGGAGAACGGCGTCGACGGCGACGATGAACGCGAAGAAGACGAGGAAGATGAAGAGGAAGAAGACGAAGATGAAGAAGTTGAAGAGGATGATGATGAAGAAGAGCCGAGGCTGAAGTATCAGAGAATGGGAGGTAGCGTTCCTTCGTTGTTAGCTACTGATGCCGCGTCTTGTGTTTCGGTTGCTGAAAGGATGATCGCGCTTGGTACTCAGGCTGGGACTATTCATATTCTTGATTTTCTCGGGAATCAGGTGAAAGAATTCTCTGCACATGCATCTGTTGTGAATGACCTTAGTTTTGACTTGGAAGGGGAATATATTGGAAGCTGTTCTGATGACGGAACGGTCGTTATAAACAGTCTTTTTACTGATGAGGTAATGAAATTTGAGTACCATCGACCCATGAAGGCGATTGCTTTGGACCCTGATTATGCAAGGAAAACGTCTAGGAGCTTTATTGCTGGTGGTTTAGCTGGTAATTTATATTTAAATTCGAAGAAATGGTTGGGCTATCGGGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCTTGGGCCAATGATGTCGGAGTGAAGGTTTATGACACTGCCAATGACCGGCGAATAACATTTATTGAAAGACCACGGGGATGTCCACACCCTGAGCTTTTGATTCCTCACTTGGTTTGGCAGGATGACACGGTCTTAGTTATTGGCTGGGGAACATCGGTCAAAATTGCCTCAATAAAGACAAATCACCATAAATCCACCAATGGGGCATACTTGCAAGTTCCTGTGCTTGGTATGACCCAGGTGGATATTGTGGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCCCCTTTTGGTGATTCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGAAGATGGAGAAAAGGATTTTAGTAGCACAGCTCCTTCACGGCAGGGCAATGCACAAAGACCTGAAGTAAGAGTAGTATCATGGAATAATGATGAACTTTCAACAGATGCTCTACCAGTACACGGGTTTGAGCATTACAAGGCAAAAGACTATTCTCTTGCTCACGCTCCCTTCTCAGGTAGCAGTTATGCCGGTGGTCAGTGGGCTGCAGGCGATGAACCACTGTACTATATTGTATCCCCAAAGGATGTAGTTATTGCAAAGCCAAGGGATACCGAAGATCATATTGCTTGGCTTCTTCAACATGGATGGCATGAAAAAGCTTTAGCTGTGGTTGAATCTAGTCATGGACGCAGTGAACTACTTGATGAGGTGGGATCTCGGTACCTTGATCATTTGATTGTGGAAAGAAAATACGGCGAGGCAGCTTCTTTGTGTCCCAAGTTACTACGAGGATCAGGTTCGGCATGGGAGAGATGGGTCTTTCACTTTGCACATCTGCGTCAACTTCCTGTTTTGGTTCCTTACATGCCTACTGAAAACCCCAGACTAAGTGATACTGCTTACGAGGTTGCTCTTGTTGCATTGGCTACAAATCAATCTTTCCATAATGATCTCTTATCCACTGTGAAATCCTGGCCATCTGTAATTTATTCTGCGCTACCGGTTATTTCAGCCATTGAACCACAGCTAAATACTTCGTCCATGACTGATTCACTCAAGGAGGCATTAGCGGAGTTGTATGTAATTGATGGGCAATATGAGAAAGCCTACTCATTGTATGCAGATCTTTTGAAGCCAGAAGTATTTGATTTTATTGATAAACACAACCTACATGATGTAATTCAAGAAAAGGTTGTCCAATTGATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTATATCCAGAATAGGGAATTAATAAGTCCACCTGAGGTTGTGAAGCAACTTCTAAATGCCGATAACAAGTCTGACAGCAGACATTTTTTACATTTGTATCTCCATTCACTATTTGAAGTAAATCCACATGCTGGGAAAGATTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACATTATACCCTTGAGAAGGCTTACGAAATTTGCATCAAAAGAGACTTGATGAAGGAGCAAGTTTTCATCTTAGGAAGGATGGGAAATGCAAAGAAAGCCCTAGCTGTTATTATAAACAAATTGGGGGATATAGAGGAGGCTGTAGAGTTTGTTACCATGCAGCATGACGATGAACTCTGGGAAGAATTAATCAAGCAATGTATTCACAAACCTGAGATGGTGGGCATCCTATTGGAGCACACAGTTGGAAATCTTGACCCCCTTTACATTGTAAATAAGGTTCCCAATGGGTTGGAAATACCTCGGCTCAGGGATCGGCTAGTTAAAATTATCACTGATTACAGGACGGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATTAAGTATTACAATGAGGCAAGGCATGGAATTTCTTTAGGCAATGAAGGAGATGAGCCACGAGTTAATATGAGTGACCACCGTGCCTCTCAGGCATTTGAGAAATCCCTAAGTCTGAAAACCATGGAGATGAAGTCAAAGACTGGGGGAGGGGGAAGATGTTGTATATGTTTTGACCCATTTTCTATACAGAATGTATCAGTCATTGTTTTCTTTTGCTGCCATGGTTACCACACAACTTGTCTCACGGATTCGTACTACACTAGTAGCACGAAAGAGAGTGAAGCCACTCCGAAAGAGGCAGAAGCATATGATGATTACAATGGTTATGCAGATGATGCCAGCGACGAAAATGAAGAAGAAACCAAGTCGGATGGTCCTCGTATGCGTTGTATTTTGTGTACTACCGCTGCTGGTTGA 2877 0.4317 MAPIPPENGVDGDDEREEDEEDEEEEDEDEEVEEDDDEEEPRLKYQRMGGSVPSLLATDAASCVSVAERMIALGTQAGTIHILDFLGNQVKEFSAHASVVNDLSFDLEGEYIGSCSDDGTVVINSLFTDEVMKFEYHRPMKAIALDPDYARKTSRSFIAGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDVGVKVYDTANDRRITFIERPRGCPHPELLIPHLVWQDDTVLVIGWGTSVKIASIKTNHHKSTNGAYLQVPVLGMTQVDIVASFQTSYFISGLAPFGDSLVVLAYIPGEEDGEKDFSSTAPSRQGNAQRPEVRVVSWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESSHGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSGSAWERWVFHFAHLRQLPVLVPYMPTENPRLSDTAYEVALVALATNQSFHNDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIDGQYEKAYSLYADLLKPEVFDFIDKHNLHDVIQEKVVQLMMLDCKRAVPLYIQNRELISPPEVVKQLLNADNKSDSRHFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMKEQVFILGRMGNAKKALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCIHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYNEARHGISLGNEGDEPRVNMSDHRASQAFEKSLSLKTMEMKSKTGGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLTDSYYTSSTKESEATPKEAEAYDDYNGYADDASDENEEETKSDGPRMRCILCTTAAG* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1644 958 Pfam Region in Clathrin and VPS 614 755 IPR000547 GO:0006886|GO:0016192
Mtr4g1644 958 MobiDBLite consensus disorder prediction 1 42 - -
Mtr4g1644 958 PANTHER VACUOLAR PROTEIN SORTING VPS41 3 958 IPR045111 GO:0006623
Mtr4g1644 958 PIRSF Vps41 1 915 IPR016902 GO:0034058|GO:0046907
Mtr4g1644 958 SMART CLH_2 612 759 IPR000547 GO:0006886|GO:0016192
Mtr4g1644 958 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 3 958 - -
Mtr4g1644 958 SMART WD40_4 86 125 IPR001680 GO:0005515
Mtr4g1644 958 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 612 759 IPR000547 GO:0006886|GO:0016192
Mtr4g1644 958 SMART ring_2 873 953 IPR001841 -
Mtr4g1644 958 MobiDBLite consensus disorder prediction 11 39 - -
Mtr4g1644 958 Gene3D Tetratricopeptide repeat domain 552 822 IPR011990 GO:0005515
Mtr4g1644 958 SUPERFAMILY RING/U-box 866 910 - -
Mtr4g1644 958 SUPERFAMILY WD40 repeat-like 58 262 IPR036322 GO:0005515
Mtr4g1644 958 MobiDBLite consensus disorder prediction 911 945 - -
Mtr4g1644 958 Gene3D - 7 270 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1644 K20184 - gmx:100804340 1694.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1644 4 28784575 28801718 Mtr4g1644 4 28784575 28801718 ECH