LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g1600	ATGCGCTCCAAGGACAGAATCTCTTACTTCTACGACGGTGATGTCGGTAGTGTTTACTTTGGGCCAAACCATCCCATGAAGCCTCACCGTCTTTGCATGACTCACCATCTTGTTCTCTCGTATGATCTTCATAAGAAGATGGAAGTTTATCGCCCACACAAAGCTTATCCTGTTGAGCTTGCCCAGTTTCACTCTGCTGATTATGTCGAGTTTTTGCACAGGATTACGCCTGACACTCAGCACTTGTTCTCCGATGAACTGGCCAAATATAATCTCGGAGAAGACTGTCCTGTGTTTGACAACTTATTTGAATTTTGTCAGATGTACGCTGGTGGAACTATAGATGCTGCACGCCGATTGAACAATAAACTGTGTGATATTGCTATAAACTGGGCTGGTGGATTACATCATGCCAAGAAATGTGAAGCCTCTGGATTTTGTTACATCAATGACTTGGTTTTAGGGATCTTAGAGCTTCTTAAACATCATCCCCGTGTTTTGTATATTGATATAGATGTGCACCATGGAGATGGTGTAGAAGAAGCTTTCTACTTCACTGACAGGGTTATGACAGTCAGTTTTCACAAGTATGGAGATTTGTTCTTTCCAGGAACAGGGGATGCTAAGGAAATAGGAGAAAGAGAAGGGAAATTTTATGCCATAAATGTCCCACTCAAGGATGGAATTGATGACTCTAGCTTCACTAGACTTTTCAAGACTATTATTTCCAAAGTAGTTGAAACATATCAACCTGGTGCCATAGTTCTACAGTGTGGAGCAGATTCACTTGCTGGAGATCGCTTGGGCTGCTTCAATCTCTCTATTGATGGACATGCTGAATGTGTTAGATTCGTAAAGAAATTTAATGTGCCCTTACTGGTCACTGGAGGTGGGGGATACACAAAAGAAAATGTTGCTCGATGTTGGACAGTTGAAACTGGAGTTCTTCTAGATACGGAGCTTCCAAATGAGATCCCGGAGAATGATTATATCAAATATTTTGGACCAGACTTCTCATTGAAGATTCCAAATGGGTTTATAGAAAATTTAAATAGCAAATCATATCTTAGCACTATAAAAATGCAAGTCATGGAAAATCTGCGCTGCATCCAACACGCTCCGAGTGTGCAAATGCAAGAGGTCCCACCTGACTTCTACATTCCTGATATCGATGAAGATTTGCAGAACCCTGATGAGCGCAATGATCAGCACACTCAAGACAAGCACATCCAGCGTGACGATGAATATTATGATGGTGACAATGACAATGATCATCAAATGGATCTTCCATGA	1293	0.4145	MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEVYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFSDELAKYNLGEDCPVFDNLFEFCQMYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNVPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFGPDFSLKIPNGFIENLNSKSYLSTIKMQVMENLRCIQHAPSVQMQEVPPDFYIPDIDEDLQNPDERNDQHTQDKHIQRDDEYYDGDNDNDHQMDLP*	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g1600	430	PRINTS	Histone deacetylase superfamily signature	133	156	IPR000286	-
	Mtr4g1600	430	PRINTS	Histone deacetylase superfamily signature	165	180	IPR000286	-
	Mtr4g1600	430	PRINTS	Histone deacetylase superfamily signature	251	261	IPR000286	-
	Mtr4g1600	430	PANTHER	HISTONE DEACETYLASE	3	428	-	-
	Mtr4g1600	430	PIRSF	HDAC_I_euk	1	429	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PANTHER	HISTONE DEACETYLASE RPD3	3	428	-	-
	Mtr4g1600	430	SUPERFAMILY	Arginase/deacetylase	6	370	IPR023696	-
	Mtr4g1600	430	Pfam	Histone deacetylase domain	24	313	IPR023801	-
	Mtr4g1600	430	Gene3D	Histone deacetylase domain	1	382	IPR037138	-
	Mtr4g1600	430	MobiDBLite	consensus disorder prediction	386	430	-	-
	Mtr4g1600	430	MobiDBLite	consensus disorder prediction	393	430	-	-
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	26	43	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	59	77	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	90	107	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	111	131	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	152	168	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	212	225	IPR003084	GO:0004407\|GO:0016575
	Mtr4g1600	430	PRINTS	Histone deacetylase signature	229	247	IPR003084	GO:0004407\|GO:0016575

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g1600	Mtr-Chr4	28062406	28071905	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g1600	K06067		-	fve:101296668	847.425

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g1600	4	28062406	28071905	Mtr4g1600	4	28062406	28071905	ECH