Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1538 ATGGCGATCCTCTACGCTTTGGTAGCAAGAGGCACGGTGGTTCTAGCAGAATTCAGCGCCGTCACCGGCAACACCGGCGCCGTAGCTCGTCGCTTACTCGAGAAGCTTCCGACCGAATCAGATTCGAGACTTTGCTTCTCGCAAGATAGATACATATTTCATATTCTCCGATCCGATGGCCTTACGTTCCTTTGTATGGCGAATGATACCTTTGGAAGGAGAATCCCTTTCTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTACAGCAGAGTTGCCAATTATGCACCGGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAGTTTTTTTCTAGTAATCCCAGTGTTGATGCCCTCAATCGTGTGAGAGGTGAAGTTGGCGAGATACGCACTATAATGGTGGATAATATTGAAAAAATATTGGAGAGAGGTGACCGGATTGAACTTCTAGTTGATAAGACAGCAACAATGCAAGATAGTTCATTTCACTTTAGAAAACAATCGAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAACTTCAAACTCTTGGCATTGTTGACATGCTTGATTGTTCTTCTGCTGTACTTTTTAATCGCTGCTTGCTGCGGTGGCATTACTCTACCATCATGCAGATCTTAA 663 0.4344 MAILYALVARGTVVLAEFSAVTGNTGAVARRLLEKLPTESDSRLCFSQDRYIFHILRSDGLTFLCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSVDALNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLLLYFLIAACCGGITLPSCRS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1538 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Mtr4g1538 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Mtr4g1538 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Mtr4g1538 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016021|GO:0016192
Mtr4g1538 220 PANTHER LONGIN-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 219 - -
Mtr4g1538 220 SMART Longin_2 28 110 IPR010908 -
Mtr4g1538 220 SUPERFAMILY SNARE fusion complex 121 188 - -
Mtr4g1538 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Mtr4g1538 220 Gene3D - 124 209 - -
Mtr4g1538 220 CDD R-SNARE 125 184 - -
Mtr4g1538 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Mtr4g1538 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Mtr4g1538 220 Pfam Synaptobrevin 124 211 IPR042855 -
Mtr4g1538 220 CDD Longin 4 118 IPR010908 -
Mtr4g1538 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Mtr4g1538 220 PANTHER SNARE PROTEINS 1 219 - -
Mtr4g1538 220 Gene3D Longin domain 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1538 Mtr-Chr4 27109299 27113960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1538 1 220 Miscellaneous Gene Families AT5G22360 87.330 1.41e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1538 K08515 - gmx:100780787 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1538 4 27109299 27113960 Mtr4g1538 4 27109299 27113960 ECH