Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1536 ATGGCTACGGTGTCGAAAAAACCTCGCAACCGCGAAATTCTCTTCGACTCCGTAATCGCACTCGTCTTCATCCTCGTCGCCTGCGTCGACCTCTGTGACGGCGCCACCGTAGTAGATGTTTACCGTCTTATCCAATACGATATCTCCGGTGTTCCGTTTGGATCTCGTCTTGCTAGCATCAATCACCACGCTGCTTCTCTTCATTTCGCTCCGAGTGCTGATCTCTCTCGTACTGTTCTTCTTATTCCTCTTCGTGAACTCAACATGTCCTTTGTTCAAGAGTATATTGGTGGTAGCAAGCCTCTGGGGGGTTTAATATTTTTGCTGCCCCAGATATTCAGTTTTAAAAACAAAGGTGGTGCGAGTAGTAATCATGATGATGGGAGCAAAGAACCGCTGAAGAATGTGCTGGACAAGCTTGAACAAATACTTATACACACCAACTTACCTTATCCTGTTTATTTTGCTTTTGAGGATGATAACATTGACACCGTGTTATTGGATATCAAGAAGAATGATGCCTCTGGTCAGCCTGCTACTGCAACTACTGGCGGGTACAAGTTTGTAGTTTCAGCCACTGAACCAAAGAAAGTTGGATCTCCACCCATTACAAATATTCAGGGATGGTTGCCAGGGCTGAAGACAGATGGTGATTCTCATCAATTACCCACCATTGCGATAGTGGCATCATATGACACCTTTGGGGCTGCTCCGGCGTTATCAGTGGGAAGCGACAGCAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGATTATTTTCTCTTTTATATTCAAATCCGAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACGTCTGGTGGGCCTTACAACTACAATGGAACCCGTAAGTGGCTTCAGAGCTTTGATCAACGTCTGCGCGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCATGGGAAAATGATCTATGGATTCATGTGTCTAAGCCTCCAGAAAATGCCTTTATTAAACAAATTCTAGAAGATTTTTCAAGTGTTGCAGAAGATTTAGGTTTCCAAGTTAATCTGAAGCATAAGAAAATAAATATTTCAAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCTACGGCACCTGAATTGCTACAGAGCACCGGTGGTTTGGTCGATGGCAGGCAATTTGTCAACGAAGCAGCAATTGTCAGAAGTGTGAAACTAATTGCTGAGTCTCTCGCGAAACATATTTATGGGCATCAAGGAAAGAACGTACAGATCTTTGCAGACAACAGTAATTTGGCTGTAAATCCTTCTTATATTCGATCATGGTTAGATGTTTTGTCCCGAACACCTCGAGTAGCACCATTTTTATCAAAAGACGATCCTTTTATTACGGCATTGAAAAAGGAATTAGAAGATCATACCGATGAAGTTAATCTACAACGAGAAGTGCTAGATGGGATGTTCACTTTCTATGATTCAACGACAGCACAGCTGAACATATATCAGGTTGCAAGTGTCACGTTTGACTTGCTGTTGCTTCTAGTGTTGGGATCATATTTAATTGTGCTCTTCAGTTTCTTGGTCATCACTACGAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCACGAAAAATGAAGACTGCATAA 1695 0.4295 MATVSKKPRNREILFDSVIALVFILVACVDLCDGATVVDVYRLIQYDISGVPFGSRLASINHHAASLHFAPSADLSRTVLLIPLRELNMSFVQEYIGGSKPLGGLIFLLPQIFSFKNKGGASSNHDDGSKEPLKNVLDKLEQILIHTNLPYPVYFAFEDDNIDTVLLDIKKNDASGQPATATTGGYKFVVSATEPKKVGSPPITNIQGWLPGLKTDGDSHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLQSFDQRLRESIDYAICLDSIGSWENDLWIHVSKPPENAFIKQILEDFSSVAEDLGFQVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLQSTGGLVDGRQFVNEAAIVRSVKLIAESLAKHIYGHQGKNVQIFADNSNLAVNPSYIRSWLDVLSRTPRVAPFLSKDDPFITALKKELEDHTDEVNLQREVLDGMFTFYDSTTAQLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKMKTA* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1536 564 Gene3D Zn peptidases 156 420 - -
Mtr4g1536 564 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Mtr4g1536 564 Pfam Nicastrin 225 362 - -
Mtr4g1536 564 CDD M28_nicalin_like 137 430 - -
Mtr4g1536 564 PIRSF Nicalin 1 559 IPR016574 GO:0009966|GO:0016020
Mtr4g1536 564 PANTHER NICALIN 11 563 IPR016574 GO:0009966|GO:0016020
Mtr4g1536 564 SUPERFAMILY Zn-dependent exopeptidases 189 386 - -
Mtr4g1536 564 ProSitePatterns EF-hand calcium-binding domain. 245 257 IPR018247 -
Mtr4g1536 564 Coils Coil 475 495 - -
Mtr4g1536 564 PANTHER NICALIN 11 563 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1536 7 562 EF-hand Containing Proteins AT3G44330 74.464 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1536 - - mtr:MTR_4g052530 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1536 4 27084109 27094298 Mtr4g1536 4 27084109 27094298 ECH