Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1514 ATGGGTGTTCCATCGTTTTATAGATGGTTACTCAACAAATATCCAAAGGCGTTTGAAGACATTAACCCTAACACAAACACTACAAATGTGGAATATGATAATCTTTATCTTGACATGAATTCTATTATTCATCCTTGTTTTCATCCTAATGATGATGATAACAACAATGGTACTCCTCCAACAACATTTGTGGAAGTGTTTGCAAATATGTTTGAGTACATTGATCGTCTTGTTACTATTGCTAAGCCACGCAAGCTATTGTACATGGCTATTGACGGAGTAGCTCCACGAGCAAAAATGAACCAGCAACGGACTCGACGTTTTAGAAATGTCAAAGACGATGAAATGCGCGAAGTCGAGGAAGAGAGACTAAGGAAGGAATTTGAAATGGAAGGCAAACAAGTTCTTCCTAAACAAGAATGTGAAGTGTCAGATTCTAACATAATAACACCAGGGACAGATTTCATGCACCAAATTTCAAACGCTCTTAAGAGTTACATTTCTTCAAAGATATCCTCTGATCCTTTATGGAAGGGTATTATGGTAATTTTATCTGATGCTAATGTTCCTGGAGAAGGTGAACATAAAGTTATGTCATTCATAAGGAAACAGCGTGGTCTTCCAGATTATGATCCAAACACGGTTCACTGTCTATATGGATCGGATGCCGATCTTATAATGCTTGGACTGTCATGCCATGAACCTCATTTTTCAATTCTAAGAGAGGTTATTTTGGATCCACCTGATCGTTATGAGAAGCTGCCACCAAATGCTCCAATGCGGTTCAAGCTCTTGCATATTTGGTTGTTGAGGGAATATCTTGAGATAGAAATGAAGATAGAAGATCCTCCCAAAAACTTCGTCTTTGATCTTGAGCGGATTGTTGATGATTTTATCTTCATTTGTTTCTTTTCTGGAAATGATTTTCTGCCTCACTTGCCGTCTTTGTATATTCATGAGGATGCAATTGATTTACTTATGACTGTTTACAAGAAAGAGTTCAGTAAGATTGGTGGATATCTAGTGGACATAAACAAGATAGGGGAGAAACATGGTGCTTATGTGAAGCTATCAAGAGTTGAAAAATTCGTTCTTATGGTTGGTACATATGAAGAAAAAATCTTCAGCAAAAGAACTGCAATTAGAGACAAGAAGTTGAGGAGGCTTATTAGTGATAATGAGAATTCGAAGCAAGAAGAACTTAATTCACATGATTGCATGGATTTTGACAATGAAAATAGTTCAAATTGCGCTCTTCGAATTAAAAAGGCTGAAGCTTCCGACAATGTTTGTCCACAGTCTGATGAAGAAATTTTGAAAAACACAAAGGATTTGAAAGAGAAATTAAAGAAATGCATAAAAGATAAAGGGGACTTGTTTAAAAGTGGAGATTTCTTGACTGACAAGATTAAATTGGGAAATGTTGGCTTTAAAGAGAGATATTATAAAGAGAAGTTTTCTGTGGAAGGCTCCACCAACATTGAGCTAAAAAGGAAAGAAATTGTTCAGAAGTACACTGAAGGATTGCTGTGGGTTCTTCAATACTACTTTTCAGGAGTTGCTTCATGGACATGGTTTTATCCCTACCACTATGGTCCATTTGTTTCCGACTTAAAGGGCATGGCTCAAGTGAGAGTAAATTTTGAGAAAGGTGTTCCATTCTTACCTTTTGATCAACTTTTAAGTGTTCTCCCTCAAAAGAGTGCTTATGCACTTCCTAAAGCCTATGCACAATTGATGCTGGATGAACAGTCGAAAATATTTGACTTGTATTCTCAGGATTTTGAAATTGATATAGAAGGAAAGCGCTTCATGTGGCAGGGTGTATGCAAACTTCCATATATGGACGAAAAAAGACTTTTAACTGAAACCAGAGAACTGAAGAATGAATTATCTGAAAGTGAAGCGAAAAGAAATTCAGTTGAAGTTGATAGGTTGTTGGTTAGTGGCACTACCAAGTTAGCAGAAAAAATTTGCTCACTGAAGTTAAACAAATTGGATACAAGCATAAGCAGCGACGGCATTGGAGGGATCATAAGTCTTTGCCACGAGTGTGTTGAGAACAACAAACATGAAGATATTGTATTCTGTGTCAAATACGAGCATCCTGTTGGTGGTACAAGTCATGTTCAGCATCTACTATGTGGTGTAAACCTTCCCGAAAAGGTAAAATTTTGTTGGGCAAATAATCAAGACAATTGGAGGAATTCAAACAAAGAAGGAAATGTTTCAAAATTTCACCCTAACTCGACTAGTTTTGGTGGAAGAAGCTTTTCACGAAATGCACCTCCCGAATCAATTCACAAAGGAGCTGGTGTTGGATGGGGTTCAGGTAGAGGGAAATCAGAAAGGATTGATCACGAGACGATCAACGAAAGGATGTCGTCGTTTTCTCCTTTTCATAAACAACCTAATGATCATGGAGGATCTTATCATCAACACCAACGTTCGCATGTGCCTTTTGGGAGAGGACGAGGAAGGACTAGTCAGAATCCGAACAATGTGTATGCATGGAGTGATTCAAAGGATAGAAGTCGTTGGTAA 2544 0.377 MGVPSFYRWLLNKYPKAFEDINPNTNTTNVEYDNLYLDMNSIIHPCFHPNDDDNNNGTPPTTFVEVFANMFEYIDRLVTIAKPRKLLYMAIDGVAPRAKMNQQRTRRFRNVKDDEMREVEEERLRKEFEMEGKQVLPKQECEVSDSNIITPGTDFMHQISNALKSYISSKISSDPLWKGIMVILSDANVPGEGEHKVMSFIRKQRGLPDYDPNTVHCLYGSDADLIMLGLSCHEPHFSILREVILDPPDRYEKLPPNAPMRFKLLHIWLLREYLEIEMKIEDPPKNFVFDLERIVDDFIFICFFSGNDFLPHLPSLYIHEDAIDLLMTVYKKEFSKIGGYLVDINKIGEKHGAYVKLSRVEKFVLMVGTYEEKIFSKRTAIRDKKLRRLISDNENSKQEELNSHDCMDFDNENSSNCALRIKKAEASDNVCPQSDEEILKNTKDLKEKLKKCIKDKGDLFKSGDFLTDKIKLGNVGFKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWVLQYYFSGVASWTWFYPYHYGPFVSDLKGMAQVRVNFEKGVPFLPFDQLLSVLPQKSAYALPKAYAQLMLDEQSKIFDLYSQDFEIDIEGKRFMWQGVCKLPYMDEKRLLTETRELKNELSESEAKRNSVEVDRLLVSGTTKLAEKICSLKLNKLDTSISSDGIGGIISLCHECVENNKHEDIVFCVKYEHPVGGTSHVQHLLCGVNLPEKVKFCWANNQDNWRNSNKEGNVSKFHPNSTSFGGRSFSRNAPPESIHKGAGVGWGSGRGKSERIDHETINERMSSFSPFHKQPNDHGGSYHQHQRSHVPFGRGRGRTSQNPNNVYAWSDSKDRSRW* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1514 847 Pfam Xrn1 helical domain 289 723 IPR041412 -
Mtr4g1514 847 Gene3D - 1 134 - -
Mtr4g1514 847 Gene3D - 135 338 - -
Mtr4g1514 847 MobiDBLite consensus disorder prediction 738 782 - -
Mtr4g1514 847 MobiDBLite consensus disorder prediction 824 840 - -
Mtr4g1514 847 CDD PIN_XRN1-2-like 35 274 - -
Mtr4g1514 847 MobiDBLite consensus disorder prediction 799 847 - -
Mtr4g1514 847 MobiDBLite consensus disorder prediction 738 759 - -
Mtr4g1514 847 Pfam XRN 5'-3' exonuclease N-terminus 1 242 IPR004859 GO:0003676|GO:0004527
Mtr4g1514 847 Gene3D - 539 641 - -
Mtr4g1514 847 Coils Coil 617 644 - -
Mtr4g1514 847 PANTHER 5'->3' EXORIBONUCLEASE 1 750 IPR027073 -
Mtr4g1514 847 PANTHER OS11G0157000 PROTEIN 1 750 - -
Mtr4g1514 847 PIRSF Exonuclease_Xrn2 1 254 IPR017151 GO:0004534|GO:0005634|GO:0006139
Mtr4g1514 847 PIRSF Exonuclease_Xrn2 246 713 IPR017151 GO:0004534|GO:0005634|GO:0006139
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1514 Mtr-Chr4 26811206 26817305 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1514 - - cam:101491694 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1514 4 26811206 26817305 Mtr4g1514 4 26811206 26817305 ECH