Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1485 ATGGGGAAAAACCAAAAAACCGAGCTAGGTCGTGCCCTCGTAAAACAACACAACCAAATGATTCAACAAACAAAGGAAAAAGGAAAAATCTATAAGAAGAAGTTTCTTGAATCGTTCACCGAAGTTTCTGATATCGACGCTATTATTGAACAAGCTGATGAAGATGTCGATGAACAACAGCTTCTTGATATTCCTCTTCCTCCTCCCACTGCGCTTATCAATTTGGATCATGCGTCTGGAAGTGATTTTAATGGTTTGACGGTTGAAGAAATGAAGAAGGAGCAGAAGATTGAAGAGGCTTTGCATGCTAGTAGTCTCAGAGTTCCAAGAAGGCCATTTTGGAGTGCTGAGATGTCTGCCGATGAGCTTCATGCCAATGAAACACAACATTTCTTAACCTGGCGTCGCAGCCTAGCAAGACTTGAGGAAAATAAGAAGCTCGTCCTTACTCCATTTGAGAAAAATCTTGATATCTGGAGACAGCTCTGGAGGGTTGTTGAGCGCAGTGATTTGCTTGTTATGGTTGTTGATTCAAGAGATCCACTGTTCTATCGCTGTCCTGACCTTGAGGCTTATGCAAAGGAAGTTGATGTGCATAAAAACACATTGCTTTTGGTTAATAAGGCAGATCTTTTACCTGCTTCTGTCAGAGAGAAGTGGGCAGAATACTTCCGTGCTCATGATATTCTCTTTATCTTCTGGTCAGCTAAAGCTGCTACGGCAGTTTTGGAAGGCAAAAAGCTCGGTTCATCACAGGCTGATAACATGGCGAGCGCAGATAACCCAGACACGAAGATATATGGAAGGGATGAGCTCTTAGCCCGCCTCCAATCAGAGGCAGAAGCGATAGTAGACATGAGAAGAAGTTCAGGCTCCTCTAAATCCTCAGATGACAATGCTTCTGTTAGTTCATCATCGAGTCACGTAGTTGTGGGATTTGTTGGATATCCTAATGTAGGAAAAAGTTCAACTATCAATGCACTGGTTGGCCAAAAAAAAACTGGTGTCACCTCTACCCCAGGAAAAACAAAGCACTTTCAGACATTAATTATTTCCGAAAAGCTGATCCTTTGTGACTGTCCTGGATTAGTTTTTCCATCCTTCTCTAGCTCAAGATATGAGATGATTACTTGTGGGGTGTTGCCAATTGATAGGATGACCCAACACCGGGAGTGTGTCCAAGTTGTCGCTAATAGAGTCCCGAGACATGTAATAGAAGAGATTTATAATATTAGTCTTCCTAAACCCAAGTCATACGAGTCCCAGTCCCGCCCTCCTCTAGCATCTGAACTTTTGAGAACATATTGTGCTTCTCGTGGGCAAACTACTTCTAGTGGACTGCCTGATGAAACCAGAGCTTCTCGTCAGATACTGAAAGATTATATTGATGGGAAGCTGCCTCACTATGAAATGCCGCCTGGCTTGTCAACTCAGGAATTAGCTTCAGAAGATTCCAATGAACACGACCAAGTTAATCCACACGTGTCAGATGCATCTGATATTGAAGATTCTTCTGTTGTTGAGACTGAACTTGCACCAAAACTTGAACACGTATTGGACGACCTTAGTTCATTTGACATGGCTAATGGTCTTGCTTCAAATAAAGTTGCACCTAAGAAGACCAAGGAATCTCAGAAGCATCATAGAAAGCCCCCGAGGACAAAAAACCGTTCATGGAGAGCGGGGAATGCAGGGAAGGATGATACTGATGGGATGCCAATTGCAAGATTCCATCAGAAACCAGTAAATTCAGGTCCTCTGAAGGTTTGA 1770 0.4294 MGKNQKTELGRALVKQHNQMIQQTKEKGKIYKKKFLESFTEVSDIDAIIEQADEDVDEQQLLDIPLPPPTALINLDHASGSDFNGLTVEEMKKEQKIEEALHASSLRVPRRPFWSAEMSADELHANETQHFLTWRRSLARLEENKKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEAYAKEVDVHKNTLLLVNKADLLPASVREKWAEYFRAHDILFIFWSAKAATAVLEGKKLGSSQADNMASADNPDTKIYGRDELLARLQSEAEAIVDMRRSSGSSKSSDDNASVSSSSSHVVVGFVGYPNVGKSSTINALVGQKKTGVTSTPGKTKHFQTLIISEKLILCDCPGLVFPSFSSSRYEMITCGVLPIDRMTQHRECVQVVANRVPRHVIEEIYNISLPKPKSYESQSRPPLASELLRTYCASRGQTTSSGLPDETRASRQILKDYIDGKLPHYEMPPGLSTQELASEDSNEHDQVNPHVSDASDIEDSSVVETELAPKLEHVLDDLSSFDMANGLASNKVAPKKTKESQKHHRKPPRTKNRSWRAGNAGKDDTDGMPIARFHQKPVNSGPLKV* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1485 589 PANTHER GTPASE LSG1-1 1 556 - -
Mtr4g1485 589 MobiDBLite consensus disorder prediction 482 496 - -
Mtr4g1485 589 MobiDBLite consensus disorder prediction 466 507 - -
Mtr4g1485 589 Pfam 50S ribosome-binding GTPase 311 369 IPR006073 GO:0005525
Mtr4g1485 589 Gene3D - 158 367 IPR027417 -
Mtr4g1485 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 381 IPR027417 -
Mtr4g1485 589 CDD HSR1_MMR1 158 366 - -
Mtr4g1485 589 PRINTS GTP1/OBG GTP-binding protein family signature 311 331 IPR006073 GO:0005525
Mtr4g1485 589 PRINTS GTP1/OBG GTP-binding protein family signature 357 372 IPR006073 GO:0005525
Mtr4g1485 589 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 159 366 IPR030378 GO:0005525
Mtr4g1485 589 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 556 IPR043358 GO:0003924
Mtr4g1485 589 MobiDBLite consensus disorder prediction 534 589 - -
Mtr4g1485 589 MobiDBLite consensus disorder prediction 541 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1485 Mtr-Chr4 26250867 26256125 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1485 K14539 - gmx:100817523 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1485 4 26250867 26256125 Mtr4g1485 4 26250867 26256125 ECH