Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1410 ATGTCGACACTCGATTCCGACGTAACCATGGTTCCCGCCGGCGAACCTTCAAGCAGCGCCGCCGGTCCATCTTCCAAGAAACCCAAACGCTTCGAGATTAAGAAGTGGAACGCCGTTGCTCTCTGGGCTTGGGATATCGTTGTTGATAACTGTGCTATTTGCCGTAACCATATCATGGATCTCTGTATTGAGTGCCAAGCTAATCAGGCTAGTGCTACTAGCGAGGAATGCACTGTTGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTAGATGGCTCAAGACTCGTCAAGTGTGTCCTCTTGACAACAGTGAGTGGGAGTTTCAGAAATACGGCCACTAG 354 0.4944 MSTLDSDVTMVPAGEPSSSAAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1410 117 PANTHER RING BOX 1 117 - -
Mtr4g1410 117 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 117 - -
Mtr4g1410 117 SUPERFAMILY RING/U-box 29 114 - -
Mtr4g1410 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Mtr4g1410 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Mtr4g1410 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Mtr4g1410 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Mtr4g1410 117 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1410 Mtr-Chr4 24971481 24975926 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1410 K03868 - gmx:100789570 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g2977 2 43441220 43444934 Mtr4g1410 4 24971481 24975926 PCT