Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1389 ATGTCTTCAAAAATGTGTTGGTTTTTTAGTTTTTTTGTGTGTCTTATGTTAAGTGTGTCTTTGTCTACCTCTTCCAAGTTTGATGAACTCTTCCAACCAAGTTGGGCTTTTGACCATTTTCTCCATGATGGAGATCTCCTTAAACTCAAACTTGATAACTCTTCTGGTGCTGGTTTTGTATCCAAAAGCAAGTATATGTTTGGAAGAGTATCTATCCAGCTTAAGCTTGTTGAAGGTGACTCAGCTGGAACTGTTACAGCTTTCTATATGTCATCAGAGGGTCCAAACCACAACGAGTTTGATTTTGAATTTTTAGGCAACACAACAGGAGAACCTTATTCTGTACAAACAAATGTGTATGTGAATGGAATTGGTAACCGTGAGCAAAGACTTAACCTTTGGTTTGACCCTACCAAAGATTTTCACTCTTACTCTATTTTCTGGAATCAACGTCAAGTTGTATTTTTAGTGGATGAAACACCAATAAGGGTACACACAAACATGGAACATAGAGGTATACCATATCCAAAGGACCAACCAATGGGAGTATATAGTTCAATATGGAATGCAGATGATTGGGCAACACAAGGAGGAAGAGTGAAAACAGATTGGTCTCATGCACCCTTTATTGCAACCTATAAATCCTTTGAAATCAATGCATGTGAGTGTCCAATTTCAGTGGCTGCAATGGATAATACAAAGAGATGTAGTAGTAATGAAGATAAGAAATATTGGTGGGATGAACCCAATTTGTCAGTGCTTAATTTGCATCAAAGTCATCAACTTATGTGGGTTAGGAATCATCATATGGTTTATGATTATTGTAGTGATGGTTCTAGGTTTCCTATTACTCCTCTTGAGTGTGTCCATCATCATCATAGTTAG 885 0.3718 MSSKMCWFFSFFVCLMLSVSLSTSSKFDELFQPSWAFDHFLHDGDLLKLKLDNSSGAGFVSKSKYMFGRVSIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGIGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHRGIPYPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKSFEINACECPISVAAMDNTKRCSSNEDKKYWWDEPNLSVLNLHQSHQLMWVRNHHMVYDYCSDGSRFPITPLECVHHHHS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1389 294 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr4g1389 294 Gene3D - 14 294 - -
Mtr4g1389 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
Mtr4g1389 294 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Mtr4g1389 294 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Mtr4g1389 294 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Mtr4g1389 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 5 292 IPR044791 GO:0004553
Mtr4g1389 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 288 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mtr4g1389 294 Pfam Glycosyl hydrolases family 16 31 205 IPR000757 GO:0004553|GO:0005975
Mtr4g1389 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 291 IPR013320 -
Mtr4g1389 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 5 292 - -
Mtr4g1389 294 CDD GH16_XET 23 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1389 Mtr-Chr4 24522795 24526462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1389 57 293 Glycoside Hydrolase AT4G03210 73.418 1.03e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1389 K08235 - gmx:100785982 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1389 4 24522795 24526462 Mtr2g3010 2 43747535 43749551 PCT