Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1367 ATGGAAACAAGATCTGCAAAACGTAAAAAAATAGAACAAGAACAAGAAAACAATGCCAAATCAAAACCATTAATAGATCGAATTAGTGATCTCCCTGATGATATTATTCATCAAATCCTTCTTTTACTTCCTATTAAATGTGTTGCACAAATGAGTGTTCTTTCAAAGAGATGGAAATTTCTTTGGACATCTTTTCCTGATCTTGATTTCACAACTCTTGATCCATTTCCACTTATTTCAACCAAAAATCATAAGAAAATTGATATATCAAGACACCCTTTATCTTCTTCAAAACTTGATTTCATCACCCAAGTTCTTTCTATTCGCGATGTAAAACATAAAGATATAAGGGTCCTTTGTTTTCGCGCATCTTTGAGTTTTTCGCGTTTAAATAACTTGGTTCGTAGCGCCATTAGGCATAATGTTAGAGAACTTGATATTGAAGTTCACACGGAAGTAGATACCGAGGATTTTTTCAATTTTCCTAGATGTGTTATTGGTAGTGAATCATTAAGAGTTTTGAAATTGAAATCTGGTTTTCGTTTGCCTCCATCATCGGTTATGCGAAACGGATTTCAATCTTTGCATACATTGTCATTATCTCTAGTTATTTTATATAATCAGCCTTCTTTATCTGATCTATTCTCTGAATCATCTTTTCCTCGTCTAAAAAATTTGCACCTTGATATGTGCTTCGGATTAACACATCTTCGTATTGGTTGTCGTGCTCTCGAAGATTTGAATTTGGAAAGATGCTATGAGCTACAAGGTTTGGAAATTTGTGGTGGAAAAATTGAAAGAATGAGAGTTATAAGTTGTTTTGATGCTTATTGTGACAACAACACTTGGGTGAGATTGAATGTGCCAAAGCTTGAAAATTTGATTTGGAAATTTAATGCAGTTACTGATGTTACTGTATTTGAGAATTCAAATTTGTTGAATGAGGCTTCCATTGGTTTCTTTATGTTGAGGGAAGGTAAGGTTAATATGGGTAGGTTTGAAAGTGCCAATAACTTCTTCTCTGGATTGTCTCATGCTCATTCCTTGACTCTTAATACCCAAACTATTGAGATTCTATCGAAGTATAAATTCATTATTCAGCCATTTTATAATCTTAAATCATTAGAGCTACATACTAGTTTGAACAAGAGTAATGTTCAAGCATTAGCATGCCTATTCAGAAGTTGTCCAACCCTCCACACATTTAATCTGGAGATCATTAACGATTACAAGATTGAAAGAAAACTATGGAATAGGGACTTATGGGACATGACTAGCACAGAAGAAGAGCAATATTGGGAATCTCAAATCCCAAGTTTGAAATCTTTTCTACAACACTTGAAAGTGGTGAAAATTAAAGGCTTTCTTGATTGTGCAAATGAAGTTACATTAGTTAAGTTTCTTCTCAAGCATGGAAAGGGTTTGGAAGAAATGAGATTGTGCACTGGACATTCAAATAGAAGAGATACTTTGAGGAGACAAAAGATAAAGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCCAAAGTGGAGTTTCAGTAG 1548 0.3398 METRSAKRKKIEQEQENNAKSKPLIDRISDLPDDIIHQILLLLPIKCVAQMSVLSKRWKFLWTSFPDLDFTTLDPFPLISTKNHKKIDISRHPLSSSKLDFITQVLSIRDVKHKDIRVLCFRASLSFSRLNNLVRSAIRHNVRELDIEVHTEVDTEDFFNFPRCVIGSESLRVLKLKSGFRLPPSSVMRNGFQSLHTLSLSLVILYNQPSLSDLFSESSFPRLKNLHLDMCFGLTHLRIGCRALEDLNLERCYELQGLEICGGKIERMRVISCFDAYCDNNTWVRLNVPKLENLIWKFNAVTDVTVFENSNLLNEASIGFFMLREGKVNMGRFESANNFFSGLSHAHSLTLNTQTIEILSKYKFIIQPFYNLKSLELHTSLNKSNVQALACLFRSCPTLHTFNLEIINDYKIERKLWNRDLWDMTSTEEEQYWESQIPSLKSFLQHLKVVKIKGFLDCANEVTLVKFLLKHGKGLEEMRLCTGHSNRRDTLRRQKIKSQMMGFSWASSNAKVEFQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1367 515 SUPERFAMILY F-box domain 25 79 IPR036047 GO:0005515
Mtr4g1367 515 SMART fbox_2 31 72 IPR001810 GO:0005515
Mtr4g1367 515 Gene3D - 8 63 - -
Mtr4g1367 515 Pfam F-box domain 28 64 IPR001810 GO:0005515
Mtr4g1367 515 PANTHER F-BOX PROTEIN-LIKE 20 460 - -
Mtr4g1367 515 SUPERFAMILY RNI-like 82 404 - -
Mtr4g1367 515 ProSiteProfiles F-box domain profile. 25 73 IPR001810 GO:0005515
Mtr4g1367 515 Pfam FBD 441 480 IPR006566 -
Mtr4g1367 515 Gene3D Ribonuclease Inhibitor 64 315 IPR032675 -
Mtr4g1367 515 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 20 460 - -
Mtr4g1367 515 SMART 9598neu4hmm 441 515 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1367 Mtr-Chr4 23869648 23871880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1367 26 420 EF-hand Containing Proteins AT5G41840 24.074 3.86e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1367 - - ahf:114927451 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1367 4 23869648 23871880 Mtr4g1367 4 23869648 23871880 ECH