Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1354 ATGTTTAAATTTTCTTGTTTCTATATTAAATCCCAAGGCAACAAGACAAAGAAATTAGCTCAACCTTCAACTGAAGCAATGGCAAAAGCTTTGCGAGATAGTTCCAAAAATCCAGTCGGTAAAGATTCGCCTATCCCTACAGGCTTAAATTCATCAGTTTCAAAACAGCAACCACGTAAACTAATGAATGTCTCTGAGAATGATATTCTCGACCAGGTTTCAGTTGAGCACATTGGTAGATTAGAGGATTTCAATAGTAAGTTTTGCATTGAATTCGACAAAAAAGTTCGCCAAACTGGGCGTATGAGGAAAAGTCAGTCGGAAAGTGTGCTTTTTCAAGGCATAACCGAGGGTGATCAAGATCTGGGGTTTTCCAAAAGCCGCTACGACTCACCAAATTCAAATGGCAGCTCTAATGATCAATCCAAAACGATTTCCAGCTTTGGGTTTCAAGTCATCCCTAGCTGTGACAATCAAGGCTCACTTTTTTCAATAGGAGATCGGACACCTTCCGATAAAGATGCTCGTGAAAATTCTGATACTCCACTTTCAGGCGATCTTGGCGGTGGCTCTGCTTACCAGACTTCTGGTCCCAGTACGCCAACTTTAAGGAAGTCACGTTCTTTGCCAAATATCAAAGCTTCTACGCTTTCTTCCGCAAATAACCATGCTTTTAAACATGCATCTTCAATTTCAAGATCTTCTGATGATCTCTGTGCTTTAGGCTTAAGGAAGAAAGAGGTGTTCATCAATGTGTCTTATGATCAAATAGGGGAAACTCAAGAAAGAGAAAGTGGCATGGAAAAAACTGAAGATAATCATATGGACAGATACTTTGATGGTTTTGATTCTCATCTACTTTCCGGCTTACAAAAGGACTGGACAATGCCAATTACAGATGATATAAGTGATGCCGAACCCCTTCAAGGAGATTCCTCGAGTGAATTTCCTAACAAGGATTTTAATGTTAAGCGGATTGAGGATTGGGTGATCGGTCTGCAGCATTGTGGACCTCCTCTCGAGGATATAACTGAATTGCCTGAATCTGTTGATCCTAAAGTTGATATTAACACCGCAAATGCTGCCGTGGCTGCCTCAGTTGTGGATCATAAGATCACTCCAGGAATGGAAACAGCTAAAAGATATATATCTTCTTTAACTGCGAATGCCACTGCAGCTCAGCTGGCAAATCATGGGTTGTCTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAACGCAATCGTAAGGATAACTGCTGGCACTCTTCCTCGAGGACTTCACACATTAAATTTGTCAAAAAACAATATCTCCACTATAGAGGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGCTACAACCGTATACTAAGAATTGGACACGGTCTGGCGTCCTGTTCTTCTCTAAAGGAGCTGTACCTGGCTGGAAACAAGATTGGTGAAGTCGAGGGTCTGCACCGCCTGTTGAAACTAAGTATCCTGGATATCCGTTTTAACAAGATTTCAACTGCAAAATGTCTTGGACAACTTGCAGCCAACTATAATTCTTTGCTAGCCATCAACTTGGAAGGGAACCCTTGCCAGAAAAATGTTGGTGATGAACAAATTAAGAAATATCTGCAAAGCCTTCTTCCTCATCTTGTCTACTACAATCGGCAGCCATTCAAAGCAAATGGTTTGAAGGACGGTGGGGATCGTGCAGTTCGATTAGGAATGAATTCACAACAGTTTGATCGCAATCTTAGAGTCGATCGCAAGTCTACAAGGAAGGGGCCATCATCTACTCGAAGGTCATCTGCTGTGTCCTCACCAAAACTGTCCAAAGGAAAGCAAGCCCAGCTCCCACCAATCAGAACCAAAACATCAACCCAAAGTCGCCATCATTTTGATTCTCCCAGCAAACCATTGAACTTGAATTCAGGACACTTCATGCGCAAGAGTCGCAGCGAGAGTACTCTTCTTGGAGCTTTGTAA 2004 0.4227 MFKFSCFYIKSQGNKTKKLAQPSTEAMAKALRDSSKNPVGKDSPIPTGLNSSVSKQQPRKLMNVSENDILDQVSVEHIGRLEDFNSKFCIEFDKKVRQTGRMRKSQSESVLFQGITEGDQDLGFSKSRYDSPNSNGSSNDQSKTISSFGFQVIPSCDNQGSLFSIGDRTPSDKDARENSDTPLSGDLGGGSAYQTSGPSTPTLRKSRSLPNIKASTLSSANNHAFKHASSISRSSDDLCALGLRKKEVFINVSYDQIGETQERESGMEKTEDNHMDRYFDGFDSHLLSGLQKDWTMPITDDISDAEPLQGDSSSEFPNKDFNVKRIEDWVIGLQHCGPPLEDITELPESVDPKVDINTANAAVAASVVDHKITPGMETAKRYISSLTANATAAQLANHGLSVIPFLSAFVSLKVLNLSGNAIVRITAGTLPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKIGEVEGLHRLLKLSILDIRFNKISTAKCLGQLAANYNSLLAINLEGNPCQKNVGDEQIKKYLQSLLPHLVYYNRQPFKANGLKDGGDRAVRLGMNSQQFDRNLRVDRKSTRKGPSSTRRSSAVSSPKLSKGKQAQLPPIRTKTSTQSRHHFDSPSKPLNLNSGHFMRKSRSESTLLGAL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1354 667 MobiDBLite consensus disorder prediction 126 143 - -
Mtr4g1354 667 MobiDBLite consensus disorder prediction 581 667 - -
Mtr4g1354 667 Pfam Leucine Rich repeat 475 490 IPR001611 GO:0005515
Mtr4g1354 667 MobiDBLite consensus disorder prediction 121 143 - -
Mtr4g1354 667 SMART LRR_sd22_2 431 452 - -
Mtr4g1354 667 SMART LRR_sd22_2 453 475 - -
Mtr4g1354 667 SMART LRR_sd22_2 498 522 - -
Mtr4g1354 667 SMART LRR_sd22_2 476 497 - -
Mtr4g1354 667 MobiDBLite consensus disorder prediction 19 57 - -
Mtr4g1354 667 MobiDBLite consensus disorder prediction 161 208 - -
Mtr4g1354 667 MobiDBLite consensus disorder prediction 184 208 - -
Mtr4g1354 667 PANTHER BNAA09G01440D PROTEIN 145 662 - -
Mtr4g1354 667 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Mtr4g1354 667 MobiDBLite consensus disorder prediction 40 57 - -
Mtr4g1354 667 MobiDBLite consensus disorder prediction 603 657 - -
Mtr4g1354 667 PANTHER NISCHARIN RELATED 145 662 - -
Mtr4g1354 667 SMART LRR_typ_2 453 476 IPR003591 -
Mtr4g1354 667 SMART LRR_typ_2 409 432 IPR003591 -
Mtr4g1354 667 SUPERFAMILY Outer arm dynein light chain 1 397 564 - -
Mtr4g1354 667 Pfam Leucine rich repeat 411 466 IPR001611 GO:0005515
Mtr4g1354 667 Gene3D Ribonuclease Inhibitor 358 553 IPR032675 -
Mtr4g1354 667 ProSiteProfiles Leucine-rich repeat profile. 455 477 IPR001611 GO:0005515
Mtr4g1354 667 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1354 Mtr-Chr4 23585491 23589418 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1354 - - gmx:100778703 793.112