Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1245 ATGGTAGTTATTAGCTTAGAATTCAACGGGAACTTCACTGCCTCTGCTTTGCATTATGGTGCCACTTCTTTCTCTTTCTCTTCCTCTTCCTATCCACTTCTTTCTCGTTCTCGAAACCTCAATTTTAACCCAGTTATGGTTTCCATGAAAAATAACGAGCCTCTTCATAATGAATTGGAATTTAAACCATCATTTGATCAATATTTGAAGGCTATGGAATCTGTTAGAAACAACACACTAGTCAAAAAGGGTCTTCATAACGAGTTTCAAGATGATGAAGTATCCTCCTCCAAAGGAAAACAGAATAAAGGGTTTAGGAATGAAAGGAAGCAGAAATCTGATGGTTCGAAGCGCCGGAGTCGTAGTTTAGACTCAAAATCTGATGAGGTTAGTAGTATTAGAGAAAAAGATAACATAATTAAGTCGAATTTGAACGGTGGCCGAGGTGGGAGTGTTGTTGAGAGAGGAGTTACTTATGATTTAGAACAACAAGTTGTTAGTAGTATTAGAGAAAGAAATAACAGCAGAAAGGGTGGTAAAACCCTTGGTGGTGGTGATAATTTTGTAGATAGAAAAAAACCTATGGATAGAGGGCCTGGTAAAAGATATAGTGAAATTGAGAGTATGACGAATAGAAATGGACGGAGGAATGTCAAGTCGAATGGAACCAGTAAGCGTTTTCTTAATAGGGGTTATGATTCTGATGATTTGGTGGTTGAACGAGCAGCATTCAAGAATCTTGAGGATCCTAACAATGTTATCAGTAAGGCACACTTTTCGCATAAAGAAATGGAGGAGAGAATCCAGAAGCTAGCTAAACAGTTGAATGGTGTGGATATCAATTTACCTGAATGGATGTTTTCTAAGATGATCAGAAGTGCAAAGCTCAAATTTAATGACTATTCCATAAGAAGGCTTATCACAATCTTAGGTAATCTAGGAAACTGGCAGCGAGTGATACAAGTCATTGAATGGCTTCAAACACGTGAGCGTTTTCAATCCCATAAGCCAAGGCATGTATATAATGCTGCACTTGACGCACTTGGGAAGTTGAGGAGACCTGTGGAAGCATTGAATATATTTCATGCAATGCAGCAACAAATGTCGACATATCCTGACTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGGCACATGAAGCAACTCTTTGATGTGATAGATATCATGCAATCTCCACCAAAGAAGAAGTTCAATAAAGGGATATTCGAGAATTGGGACCCAAGGCTGGAACCTGATATCGTAGTTTATAATGCAGTCCTTAATGCATGTGTTAAGGGGAAACAGTGGGAAGGAGCATTTTGGGTTTTACAGCAGTTAAAGAAGCAGAACATACAACCTTCTGCCGCGACATATGGTCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGATTTTTTTAGAAAACTTCAGAAATCTTCTATTCCTAATCCATTGACATATAGAGTTCTCGTGAATACATTTTGGAAAGAGGGAAAAATTGACGAGGCTGTCTCGGCTGTCCATGAAATGGAAAGACGTGGAATTGTTGGTTCTGCTTCACTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGACGAAGTTGCGAGGCACTGATGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTGGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAACATTCAAGACGGATCTTACATTTTTGAGAAAATGAAGGACATTTGTGCTCCGAATCTGGTTACTTACAACATAATGCTGAAAGCATACGTTGATCATGGGATGTTTCGAGAAGCTAAAGAGTTATTTGAGCAAATGTTAGAAAACACAAATCATCTGAGTAGAAATGATGATTACAAAATGCGAGTGATACCAGATATATACACATTTAATACCATGTTAGATGCATGTGCTGCAGAAAAAAGATGGGATTATTTTGACCATGTTTACCAGAGGATGCTGTACCATGGTTATCACTTCAATCCAAAACGACATCTTCGAATGATACTGGAGGCTTCAAGAGCTGGAAAGGAAGAGCCATTGGAGATAACATGGAACCACTTGGCCGCTACAGATCGAATTCCACCAGTTTCTCTAATCAAGGAGAGGTTCTGTACAAAGCTTGAGAAGGATGATTATATTATTGCCCTCCAATGCATCACAAATAGCACACCAAAAGATTTGCATCCATTTTCAAAGTCGTCATGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGAAGGATACAGTTGTCAGGCTTATGAATGCAGCCAGTAATATAATTTCCAATATTAGTGTGCCAAATCCAGCACTTGTTTGTTTAATTCAATCATGCAAAGATTTTTGTTTTGCCACTGATCTCAGTGCAGCTGACATGGATTCAGCAAACAATGTATTTGCATTAGAAAGCAAACAGGAAGTAAACCAATACTAG 2490 0.388 MVVISLEFNGNFTASALHYGATSFSFSSSSYPLLSRSRNLNFNPVMVSMKNNEPLHNELEFKPSFDQYLKAMESVRNNTLVKKGLHNEFQDDEVSSSKGKQNKGFRNERKQKSDGSKRRSRSLDSKSDEVSSIREKDNIIKSNLNGGRGGSVVERGVTYDLEQQVVSSIRERNNSRKGGKTLGGGDNFVDRKKPMDRGPGKRYSEIESMTNRNGRRNVKSNGTSKRFLNRGYDSDDLVVERAAFKNLEDPNNVISKAHFSHKEMEERIQKLAKQLNGVDINLPEWMFSKMIRSAKLKFNDYSIRRLITILGNLGNWQRVIQVIEWLQTRERFQSHKPRHVYNAALDALGKLRRPVEALNIFHAMQQQMSTYPDLVAYHSIAVTLGQAGHMKQLFDVIDIMQSPPKKKFNKGIFENWDPRLEPDIVVYNAVLNACVKGKQWEGAFWVLQQLKKQNIQPSAATYGLVMEVMFSCGKYNLVHDFFRKLQKSSIPNPLTYRVLVNTFWKEGKIDEAVSAVHEMERRGIVGSASLYYDLARCLCAAGRSCEALMQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGSYIFEKMKDICAPNLVTYNIMLKAYVDHGMFREAKELFEQMLENTNHLSRNDDYKMRVIPDIYTFNTMLDACAAEKRWDYFDHVYQRMLYHGYHFNPKRHLRMILEASRAGKEEPLEITWNHLAATDRIPPVSLIKERFCTKLEKDDYIIALQCITNSTPKDLHPFSKSSWLNLFKENSQRFQKDTVVRLMNAASNIISNISVPNPALVCLIQSCKDFCFATDLSAADMDSANNVFALESKQEVNQY* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1245 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Mtr4g1245 829 Pfam PPR repeat family 422 466 IPR002885 -
Mtr4g1245 829 SUPERFAMILY TPR-like 412 626 IPR011990 GO:0005515
Mtr4g1245 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 626 IPR002885 -
Mtr4g1245 829 MobiDBLite consensus disorder prediction 90 134 - -
Mtr4g1245 829 PANTHER OS01G0674700 PROTEIN 89 806 - -
Mtr4g1245 829 PANTHER OS01G0674700 PROTEIN 49 148 - -
Mtr4g1245 829 Pfam Pentatricopeptide repeat domain 561 609 IPR002885 -
Mtr4g1245 829 MobiDBLite consensus disorder prediction 186 202 - -
Mtr4g1245 829 PANTHER OS01G0674700 PROTEIN 89 806 IPR044645 GO:0009658
Mtr4g1245 829 PANTHER OS01G0674700 PROTEIN 49 148 IPR044645 GO:0009658
Mtr4g1245 829 Gene3D Tetratricopeptide repeat domain 413 509 IPR011990 GO:0005515
Mtr4g1245 829 Gene3D Tetratricopeptide repeat domain 260 412 IPR011990 GO:0005515
Mtr4g1245 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Mtr4g1245 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Mtr4g1245 829 Coils Coil 261 281 - -
Mtr4g1245 829 MobiDBLite consensus disorder prediction 169 202 - -
Mtr4g1245 829 Gene3D Tetratricopeptide repeat domain 545 709 IPR011990 GO:0005515
Mtr4g1245 829 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Mtr4g1245 829 TIGRFAM PPR: pentatricopeptide repeat domain 598 626 IPR002885 -
Mtr4g1245 829 TIGRFAM PPR: pentatricopeptide repeat domain 645 671 IPR002885 -
Mtr4g1245 829 TIGRFAM PPR: pentatricopeptide repeat domain 495 526 IPR002885 -
Mtr4g1245 829 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Mtr4g1245 829 Pfam PPR repeat 340 366 IPR002885 -
Mtr4g1245 829 Pfam PPR repeat 645 674 IPR002885 -
Mtr4g1245 829 Pfam PPR repeat 495 524 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1245 Mtr-Chr4 18625228 18632128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1245 443 693 Glycosyltransferase AT1G05670 22.353 1.23e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1245 - - mtr:MTR_0001s0430 1631.31