Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1048 ATGGTAGTAGTGTCCAAATTATCATTGTTATTAACAATGATGATGATGGTTACGATAGTAAAATCACTTTCACTAATTAACTATGGTGATGCATTAACAAAAAGCATCTTATTTTTTGAAGGTCAAAGGTCTGGCAAATTGCCACCTTCTCAACGTATGACATGGAGAAAAGACTCTGCCCTTCATGATGGATGTGATATTCTTATGAACATGGTTGGTGGTTACTATGATGCTGGTGACAATGTAAAATTCAATTTCCCAATGGCATATACAACCACCATGCTGGCTTGGAGTGTGGTGGAATTTGGAGAACTCATGGGTCCGGATTTGCAACATGCATTGGAAGCAATTCGTTGGGGAACTGATTATTTCCTCAAAGCAACAAAAAGACCAAATATTGTTGTAGCACAAGTTGGCGATCCCATTAGTGACCATGATTGTTGGGAAAGACCAGAAGACATGGACACTTCTAGGACAACCTATTATTTGTCCGCGACAAGACCTGGTTCGGAGGTTTCAGCCGAGATTGCAGCCGCGCTTGCGGCGTCATCCATTGCTTTCAGAAACATTAATCGTGGATATTCTAGGATTCTTCTTGCTAGGGCTAAACGGGTATTTGACTTTGCAAATTATCACCGTGGGTCTTACAATAATGCCATAGGTTCTGGAGCATGCCCCTTCTATTGTGACATTAATGGATACATAGACGAGTTGATTTGGGGTGCAGCATGGTTGTACAAAGCAAGTAATAACCAATATTACATGAACTTTGTAAAATCAAATATAGAATACATACAATCCAATGAATTTGGATGGGATTCCAAGCATGCTGGCATTAATGTGCTTGTTTCTCATTGGATGATGAACGATGCATCAAACCAGAGTCCTTTCATTTCCAATGCAGACAACCTTATATGCTCTTTGTTGCCCAATTCACCAACCAAATCAGTCACATACTCCAAAGGTGGGCTTCTATTCAAAGCTGGACCAAGTAACCTACAACATGTAACAGCACTATCTTTTCTGTTAGTTGTTTATGGACACTACATGGAAGCTAACAACAAAATAGTAAATTGTGGGAATGTAGTTGCCAAACCATGCGATCTTATTAATCTTGCCAAATCACAGGTGGATTATGTACTAGGGAACAATCCACTTGAAATGTCATACATGGTTGGGTATGGACAAAAATACCCTCAGAAGATACATCATCGTGGTTCAACTTTACCATCATTGGATGTACACCCAAAACATATGGGGTGTCGTGATGGCGACAAATATTTTCAATCATCAACACCTAATATCAATGTGCTAATAGGTGCAATTGTTGGAGGACCGGCAAATGATGATTCTTTTCAAGACTCACGCTATAATGTTTCTCAATCGGAGCCAACTACATATATCAATGCTCCTTTTGTTGGTGTTTTAGCTTACTTCAAAAAATATTAG 1449 0.3927 MVVVSKLSLLLTMMMMVTIVKSLSLINYGDALTKSILFFEGQRSGKLPPSQRMTWRKDSALHDGCDILMNMVGGYYDAGDNVKFNFPMAYTTTMLAWSVVEFGELMGPDLQHALEAIRWGTDYFLKATKRPNIVVAQVGDPISDHDCWERPEDMDTSRTTYYLSATRPGSEVSAEIAAALAASSIAFRNINRGYSRILLARAKRVFDFANYHRGSYNNAIGSGACPFYCDINGYIDELIWGAAWLYKASNNQYYMNFVKSNIEYIQSNEFGWDSKHAGINVLVSHWMMNDASNQSPFISNADNLICSLLPNSPTKSVTYSKGGLLFKAGPSNLQHVTALSFLLVVYGHYMEANNKIVNCGNVVAKPCDLINLAKSQVDYVLGNNPLEMSYMVGYGQKYPQKIHHRGSTLPSLDVHPKHMGCRDGDKYFQSSTPNINVLIGAIVGGPANDDSFQDSRYNVSQSEPTTYINAPFVGVLAYFKKY* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1048 482 Pfam Glycosyl hydrolase family 9 28 476 IPR001701 GO:0004553|GO:0005975
Mtr4g1048 482 PANTHER ENDOGLUCANASE 9 481 - -
Mtr4g1048 482 SUPERFAMILY Six-hairpin glycosidases 27 481 IPR008928 GO:0005975
Mtr4g1048 482 Gene3D - 24 482 IPR012341 GO:0005975
Mtr4g1048 482 PANTHER ENDO-1,4-BETA-GLUCANASE 9 481 - -
Mtr4g1048 482 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 379 405 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1048 Mtr-Chr4 13511641 13514791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1048 4 482 Glycoside Hydrolase AT1G70710 55.943 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1048 K01179 - gmx:100814370 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1048 4 13511641 13514791 Mtr4g1048 4 13511641 13514791 ECH