Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0952 ATGGCCGAAAATAACCCTCCAAACCCTACTCCTCCTCATGAAGAAACCTATTCATCCCCCCTAACCCCTGAACCGGAGCTCCCGGTTACACAGAAAACTGAACTAACCGATGAACCTTCACAACAACCTGAAACAGTAACCGATACTAAAGGTAACCCATCACAAGAAGAAGATGTTGTTGCAGCTGAAGATTCCACAGAACCCTCAAAAGAAGAACAAAAAGAACCCAATCAGAACAAGATTCCACAGAATCTAGGCTCATTCAAAGAAGAAAGCAACAGAGTAACCGATCTATCCGAATCCGAACGAACCTCCCTTCAACAATTCAAAACTCTTCTAACAGATTCCCTCAAAGATGACCAACAAGTTTCAATCTACGGCGTTCCTCTTCTCGAAGACGAACGCACAGACACAATCCTCCTCAAATTCCTCCGAGCACGCGACTTCAAACCAAAAGAATCACACACAATGCTCAAAAACACACTCCAATGGAGAAAATCATTCAACATAGACGCACTTTTAGACGAAGATCTTGGCGATGATTTAGATAAAGTTGTTTTCATGCATGGTTTTTCGAGGGAAGGGCATCCTGTTTGTTATAATGTGTATGGTGAGTTTCAGAATAAGGAGCTTTATGAGAAGACATTTGGAAGTGAAGAAAAGAGGGAGAGGTTTTTGCGTTGGAGGGTTCAGTTTTTGGAGAAAAGTATTAGGAAACTTGATTTTAGTCCTGGTGGTGTTAATACTCTTTTTCAAGTTAATGATCTTAAAAACTCTCCTGGTCCTGCTAAAAAGGAATTAAGGGTTGCTACTAAAATGGCTTTGGAGTTGCTTCAAGATAATTATCCAGAGTTTGTTGCTAAACAGGTTTTCATCAATGTGCCATGGTGGTATCTTGCATTCTATACCATTCTCAATCCGTTCTTGACTCAAAGGACAAAGAGCAAATTTGTGTTTGCAGGCACATCCAAGTCTCCTGATACACTTTTCAAGTATATCACTCCCGAGCAAGTGCCAGTTCAATATGGTGGCCTGAGTGTTGATTTTTGTGATTGCAACCCGGATTTCAGCATTAATGATCCTACCACAGAAATTCCTGTAAAGCCGAGCACAAAGCAAACTGTGGAAATTGCTATTTATGAGAAATGCATTATAGTCTGGGAGTTGCGTGTCGTGGGCTGGGAGGTTAGTTATAGTGCTGAATTCAAACCAGATGATAAGGATGCATACGGAGTTATTATACAGAAGGCTACAAAGATGACCCCGACTGATGAACCAGTGGTTTCAAATAGCTTTAAAGTTGCAGAACTTGGAAAGTTGTTCCTCACTGTCGACAATCCCACCGTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTACTCTGATTGA 1398 0.412 MAENNPPNPTPPHEETYSSPLTPEPELPVTQKTELTDEPSQQPETVTDTKGNPSQEEDVVAAEDSTEPSKEEQKEPNQNKIPQNLGSFKEESNRVTDLSESERTSLQQFKTLLTDSLKDDQQVSIYGVPLLEDERTDTILLKFLRARDFKPKESHTMLKNTLQWRKSFNIDALLDEDLGDDLDKVVFMHGFSREGHPVCYNVYGEFQNKELYEKTFGSEEKRERFLRWRVQFLEKSIRKLDFSPGGVNTLFQVNDLKNSPGPAKKELRVATKMALELLQDNYPEFVAKQVFINVPWWYLAFYTILNPFLTQRTKSKFVFAGTSKSPDTLFKYITPEQVPVQYGGLSVDFCDCNPDFSINDPTTEIPVKPSTKQTVEIAIYEKCIIVWELRVVGWEVSYSAEFKPDDKDAYGVIIQKATKMTPTDEPVVSNSFKVAELGKLFLTVDNPTVKKKRLLYRFKIKPYSD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0952 465 ProSiteProfiles GOLD domain profile. 326 460 IPR009038 -
Mtr4g0952 465 PANTHER PATELLIN-3 29 121 - -
Mtr4g0952 465 PANTHER PATELLIN-3 119 465 - -
Mtr4g0952 465 SUPERFAMILY CRAL/TRIO N-terminal domain 93 177 IPR036273 -
Mtr4g0952 465 MobiDBLite consensus disorder prediction 1 102 - -
Mtr4g0952 465 Pfam CRAL/TRIO, N-terminal domain 106 160 IPR011074 -
Mtr4g0952 465 MobiDBLite consensus disorder prediction 1 18 - -
Mtr4g0952 465 PANTHER PATELLIN-1 29 121 IPR044834 GO:0008289
Mtr4g0952 465 PANTHER PATELLIN-1 119 465 IPR044834 GO:0008289
Mtr4g0952 465 SMART sec14_4 180 347 IPR001251 -
Mtr4g0952 465 Coils Coil 460 465 - -
Mtr4g0952 465 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 175 344 IPR001251 -
Mtr4g0952 465 MobiDBLite consensus disorder prediction 63 77 - -
Mtr4g0952 465 PRINTS Cellular retinaldehyde-binding protein signature 139 161 - -
Mtr4g0952 465 PRINTS Cellular retinaldehyde-binding protein signature 302 321 - -
Mtr4g0952 465 Pfam CRAL/TRIO domain 185 344 IPR001251 -
Mtr4g0952 465 Gene3D - 91 379 IPR036865 -
Mtr4g0952 465 MobiDBLite consensus disorder prediction 33 54 - -
Mtr4g0952 465 MobiDBLite consensus disorder prediction 78 92 - -
Mtr4g0952 465 CDD SEC14 184 345 IPR001251 -
Mtr4g0952 465 SUPERFAMILY CRAL/TRIO domain 185 353 IPR036865 -
Mtr4g0952 465 SMART CRAL_TRIO_N_2 136 161 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0952 Mtr-Chr4 12292824 12295936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0952 140 339 Acyl Lipid Metabolism Gene Families AT1G55840 28.505 3.99e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0952 - - mnt:21391677 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0952 4 12292824 12295936 Mtr4g0952 4 12292824 12295936 ECH