Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0780 ATGTGGACGCAGCAGCAACTTGTACAACCAGTGCCACCCTTGAAACTCTTCCACTCATTTCAACCATCAAATCATGCAAAAATTCAATCTTTATCAAAATTAAATTCGACCCAAAATCTAAAAACACCATTAACTTTGGAAGAACTTCCTCCAAACGCGCTTCGGAGAAAGAAAGATGCAGAATGGAGAGGAGGGTTCTCTCTTGGTGTCGACTTGGGAATGGCTCGTACTGGCATTGCTCTCAGCAAAGGATTCACTTTTCGCCCTTTAACGGTTTTGAAACTGCGAGGACAGAAACTCGAGGTCCGGATAATGAACATCGCAGAAGAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAGTCTTCTGATGGAGAGGAAACGATACAGTCAAACATAGTCCGTTCTGTTGCTGGAAGGCTTGCTATTCGAGCTGCTGAGAGGGGCTGGAGAGTATATCTACACGATGAATATGGGACGACAAATGCCGCCATAGATCGAATGATCAACATGGGCGTGAATAGGTCTCAGCAGAAGAAACAAGATGCCTATGCTGCCGTGATGTTACTTGAGAGATATTTCTCCACATCAGGTCAGAAAACTGAACTTGTTGTGCCCAAGAATCTTGAACTACAAGGAAAACTTAGAACTGGTCCTCCTAGAGATGATGATTATTTCTCAGACGAAGATTAA 696 0.4325 MWTQQQLVQPVPPLKLFHSFQPSNHAKIQSLSKLNSTQNLKTPLTLEELPPNALRRKKDAEWRGGFSLGVDLGMARTGIALSKGFTFRPLTVLKLRGQKLEVRIMNIAEEEEADEFIIGLPKSSDGEETIQSNIVRSVAGRLAIRAAERGWRVYLHDEYGTTNAAIDRMINMGVNRSQQKKQDAYAAVMLLERYFSTSGQKTELVVPKNLELQGKLRTGPPRDDDYFSDED* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0780 231 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 68 195 IPR005227 GO:0006364
Mtr4g0780 231 SMART rnase_8s 65 165 IPR006641 GO:0006139
Mtr4g0780 231 CDD YqgF 68 195 IPR005227 GO:0006364
Mtr4g0780 231 Pfam Holliday junction resolvase 67 196 IPR005227 GO:0006364
Mtr4g0780 231 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 28 229 IPR005227 GO:0006364
Mtr4g0780 231 SUPERFAMILY Ribonuclease H-like 66 197 IPR012337 -
Mtr4g0780 231 Hamap Putative pre-16S rRNA nuclease [yqgF]. 65 199 IPR005227 GO:0006364
Mtr4g0780 231 Gene3D - 67 204 IPR037027 GO:0006139
Mtr4g0780 231 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 28 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0780 Mtr-Chr4 10081057 10086106 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0780 - - lja:Lj3g3v1440180.1 308.145