Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0682 ATGGAGTTTAACTCTCTAAGTTATGGAGATGGTGATAGTAATGCACTAATTTTGCCAACTAAGAAGATGAAGAAAAGGAAAGAGATGGAACAGGAACGTGGAAAGAAACGTGGTAAAGTCCAATCAAATAAGAAACAGAAGTTGAGCAAAACTCAGAAAAAGAAGTTGAAGAAATCAGAGGATGACAAGGAGAAGCAACTTCTGCTGGAAAAAGCCCTGAAGACACTAAATGAGAACACTCTTCCTGAGTATGCATTTCCTCTTCTGCAGTCATCGTGCAATATTAATCGGGTTGAGACCGTGAAGGAAAAGCGTAGGAAGGCTGTGCATTTATTGAAAGAAGGATTGGATGTCCCACATGATGATGACCTGTCCAAGAAACAGGATATTGCATGTACATCTGAATCCGAGGAAGAAGAGATTCATACGGTGCAGGTTAAGGAATTTGAGGAAAATGATGTTATTCAACCTTTTAGAACCGAAAAAGAAATTTTATATACAACAACTGTTCCTTTGGAGTCCACTCAAGAACCAGTTCATAGAAATGAAGTTATTAATTATGAAACTGTCGCTGAACCTGTGGCTGACGTTTCCACTGACAAGCAACCTGATGAAATCAGAAGTTCTTCTCCCACCTCTCGTTCTATTGATGACATAAAAAGCACCAATTCAAAGGACAGGAAAAATGAGAACCCCACCACGAACTTCAATGAATTGAGCAATCTTCCACATGTTTCTACACAAAGGCCCTTGACTACTCCTACAGTTGTGCATGTTTATAGACCACCAGAGGTTCAAGAGAAAAGAAAGGATCTTCCTATTGTCATGATGGAGCAAGAGATAATGGAAGCTATAAACTACAATTCCAGTGTCATCGTATGTGGAGAAACTGGATGTGGTAAAACAACACAGGTTCCTCAGTTTCTTTATGAAGCTGGCTATGGTTCAAGCAAGTTCCATGCTCGCAGTGGTATTATTGGTGTCACTCAACCACGTCGAGTGGCTGTTCTTGCCACAGCAAAGCGTGTGGCATATGAGCTTGGTGTTCGGCTAGGAAAGGAGGTTGGCTTTCAAGTTAGGTACGATAAGAAAATTGGAGAAAATTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTGCGAGAAGTTCAGAATGATATTTTATTAAGGCGTTATTCTGTCCTAATTCTTGATGAGGCTCATGAAAGGAGCTTGAACACAGACATTCTGATAGGGATGCTCTCGCGTGTGATCAGAACTCGCCAAAAGATTTATGATGAACAACAGAAGATGGTCCTTTCAGGAGAAAGTATAAGTCCTGATAAAATGGTTTTTCCATTAAAACTTGTGCTGATGAGTGCCACCTTGCGAGTGCAAGACTTCACATCTGGAAGGTTATTCCACACTCCTCCACCTGTGATAGAAGTTCCAACGAGGCAATTTCCAGTTACAATGTATTTTGCAAAGAAAACCGAGATAACAGATTATGTTGGTGCTGCATATAAGAAGATCTTGGCAATTCACAAGAAGTTGCCATCTGGGGGCATACTTGTCTTTGTCACTGGACAAAGGGAAGTGGAGGACTTGTGCAGGAAGCTACGCAAAGCTTCAAAGGAGTTTATCATGAAAAAAGTTAAAGGATCTGTGGAAAATGATAGCAATGTGGTCAATGAAACAAGTTCTGTTGAGGGAATAAATATTAATGAGATTAATGAAGCATTTGAGATGCCTGGAAGTTCATCCATGCAACAAACTGATAGGTTTAGTGGTTATGATGAAGATGACAATAATTTTGATGAGAACGAATCTGATTCTTATGATTCAGAAACAGAGAGTGAATTGGAATTCAATGATGATGATAAAAATAATCACAACGGTTCAGAGAACAATAACAATATTGTGGATGTCTTAGGAAATGAAGGAAGTCTTGCTTCATTGAAGGCTGCTTTCGAAAACTTGTCTGGGCAAGCAACATTAAGTTCCTCAAATGTGAATACAGAAGATGGTTTAGACCAATCGAAAGTTGGCAGGGAGAAAATAGCTAGAGAAAATCACGATTCCTCTCCAGGTGCACTCTTTGTTCTACCACTTTATGCTATGCTGCCTGCTGCAGCTCAACTTCGTGTATTTGATGGAGTCAAGGAGGGAGAGAGACTAGTTGTTGTTGCTACAAATGTTGCAGAAACATCTTTAACAATTCCAGGGATTAAGTATGTGGTTGATACTGGAAGGGAAAAGGTGAAGAATTATGATTCCTCTAATGGCATGGAGACATATGAGGTGAAATGGATAAGTAAGGCATCTGCTGCTCAACGTGCAGGCAGAGCTGGAAGAACTGCTGCGGGACACTGTTATCGTCTCTATTCTTCTGCAGCTTTTAGTAATGAGTTTCCTGAGTTCTCTCCTGCTGAAGTTGAGAAAGTACCTGTCCATGGTGTTGTCCTTCTCTTGAAATCCATGCAAATTAAGAAGGTTGCAAACTTCCCGTTTCCTACTTCTCTTAAGGCTGCTTCCCTGCTTGAAGCTGAGAATTGCTTGAGAGCTCTTGAAGCACTTGATAGCAAAGATGAGCTCACACTTTTAGGAAAAGCCATGGCACTTTATCCTTTGAGTCCTCGTCATTCTAGAATGATCCTTACTGTTATAAAAAATACAAGGTACAAGCGTATTTGTAACTCAAGTCTGCTTTTGGCATATGCTGTTGCAGCTGCTGCTGCTTTGAGTTTGCCAAATCCTTTTGTAATGCAATATGAAGGAAATGATAGCAACAAAGATTCAGAAACGTCCGAGAAATCTAGAATGGGGGACAATGAGAACAATATTGATAAAACAGAAAAGACGAAGAGAAAGAAACTAAAACAGACCTCTAAAGTTGCTCGTGAAAAGTTTCGAATTGTCAGTAGTGATGCGCTAGCCATAGCATATGCCTTGCAGTGTTTTGAACATTCACAGAATTCAGTACAATTCTGTGAAGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTAGACAGCAACTCCTCAGACTGGTCTTTTTTCAGAGTGATAAAGGTGGTTTAGAACAAGAGTACTCGTGGACTCATGGAACTCTTGAGGATGTGGAACATGCTTGGCGAGTTTCTTCTGCGCACTATCCTCTCCCTCTGGTTGAGGAAAGGCTCATTTGTCGAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCCAAACGTATTCCAATTTCTTCAAAGACCGATGATGGAGTGACAATTTCTCGTGCCGGTAGGTATCAGTCATGCATGGTTGATGAAAGTATTTTCATTCATCGTTGGTCATCGGTCTCTACTGTACGCCCCGAGTTTCTGGTTTACAATGAGCTATTAGAGACAAAAAGACCAAACAAAGAAGGGGAGACGAGTGCGAAGAGAGCATACATGCATGGAGTAACGAATGTGGACCCAACTTGGCTAGTTGAGAATGCAAAGTCTTCATGCATCTTCTCTCCACCCCTGACAGATCCCAGACCATTTTATGATGCACAGGCTGACCAAGTAAAATGTTGGGTCATCCCAACCTTTGGACGCTTCTGTTGGGAACTTCCTAAGCATTCAATACCCATTAGCAATGTCGAGCATCGGGTGCAGGTGTTTGCCTATGCTTTACTTGAAGGTCAGGTGTGTCCATGCCTGAAAACAGTTCGAAAATACATGTCAGCCCCTCCTGAAACTATTTTGAGGAGAGAATCCTTTGGTCAAAAAAGGGTAGGAAATCTTATAAGCAAGTTAAATAGCAGGTTGATTGATAGCTCTGCCACGTTGAGAATAGTGTGGAAGCAGAATCCAAGAGAGTTATTTTCAGAAATTTTGGATTGGTTTCAACAGGGTTTTCGCAAGCACTTTGAAGAGCTATGGTTACAAATGCTTGGCGAAGTGCTACAGGAGACCCAAGAACGACCTCTGCATAAAAGTTCAAAAAAAAAGTCAAAAGTAAAATCTAAATCGCGGCAATGA 3996 0.4089 MEFNSLSYGDGDSNALILPTKKMKKRKEMEQERGKKRGKVQSNKKQKLSKTQKKKLKKSEDDKEKQLLLEKALKTLNENTLPEYAFPLLQSSCNINRVETVKEKRRKAVHLLKEGLDVPHDDDLSKKQDIACTSESEEEEIHTVQVKEFEENDVIQPFRTEKEILYTTTVPLESTQEPVHRNEVINYETVAEPVADVSTDKQPDEIRSSSPTSRSIDDIKSTNSKDRKNENPTTNFNELSNLPHVSTQRPLTTPTVVHVYRPPEVQEKRKDLPIVMMEQEIMEAINYNSSVIVCGETGCGKTTQVPQFLYEAGYGSSKFHARSGIIGVTQPRRVAVLATAKRVAYELGVRLGKEVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIRTRQKIYDEQQKMVLSGESISPDKMVFPLKLVLMSATLRVQDFTSGRLFHTPPPVIEVPTRQFPVTMYFAKKTEITDYVGAAYKKILAIHKKLPSGGILVFVTGQREVEDLCRKLRKASKEFIMKKVKGSVENDSNVVNETSSVEGININEINEAFEMPGSSSMQQTDRFSGYDEDDNNFDENESDSYDSETESELEFNDDDKNNHNGSENNNNIVDVLGNEGSLASLKAAFENLSGQATLSSSNVNTEDGLDQSKVGREKIARENHDSSPGALFVLPLYAMLPAAAQLRVFDGVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEVEKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAMALYPLSPRHSRMILTVIKNTRYKRICNSSLLLAYAVAAAAALSLPNPFVMQYEGNDSNKDSETSEKSRMGDNENNIDKTEKTKRKKLKQTSKVAREKFRIVSSDALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLRQQLLRLVFFQSDKGGLEQEYSWTHGTLEDVEHAWRVSSAHYPLPLVEERLICRAICAGWADRVAKRIPISSKTDDGVTISRAGRYQSCMVDESIFIHRWSSVSTVRPEFLVYNELLETKRPNKEGETSAKRAYMHGVTNVDPTWLVENAKSSCIFSPPLTDPRPFYDAQADQVKCWVIPTFGRFCWELPKHSIPISNVEHRVQVFAYALLEGQVCPCLKTVRKYMSAPPETILRRESFGQKRVGNLISKLNSRLIDSSATLRIVWKQNPRELFSEILDWFQQGFRKHFEELWLQMLGEVLQETQERPLHKSSKKKSKVKSKSRQ* 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 595 616 - -
Mtr4g0682 1331 PANTHER ATP-DEPENDENT RNA HELICASE 11 131 - -
Mtr4g0682 1331 PANTHER ATP-DEPENDENT RNA HELICASE 249 1312 - -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 19 37 - -
Mtr4g0682 1331 CDD SF2_C_RHA 677 788 - -
Mtr4g0682 1331 Gene3D - 831 985 - -
Mtr4g0682 1331 SMART helicmild6 678 780 IPR001650 -
Mtr4g0682 1331 Gene3D - 661 800 IPR027417 -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 1317 1331 - -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 1311 1331 - -
Mtr4g0682 1331 Pfam DEAD/DEAH box helicase 279 460 IPR011545 GO:0003676|GO:0005524
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 923 949 - -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 918 953 - -
Mtr4g0682 1331 Gene3D - 480 585 IPR027417 -
Mtr4g0682 1331 SMART ha2_5 841 974 IPR007502 GO:0004386
Mtr4g0682 1331 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 645 821 IPR001650 -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 228 254 - -
Mtr4g0682 1331 CDD DEXHc_DHX37 272 476 - -
Mtr4g0682 1331 SMART ultradead3 270 486 IPR014001 -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 38 53 - -
Mtr4g0682 1331 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 393 402 IPR002464 -
Mtr4g0682 1331 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 474 IPR014001 -
Mtr4g0682 1331 Pfam Helicase associated domain (HA2) 842 972 IPR007502 GO:0004386
Mtr4g0682 1331 Gene3D - 217 479 IPR027417 -
Mtr4g0682 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 884 IPR027417 -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 204 218 - -
Mtr4g0682 1331 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1058 1156 IPR011709 -
Mtr4g0682 1331 PANTHER - 11 131 - -
Mtr4g0682 1331 PANTHER - 249 1312 - -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 1 63 - -
Mtr4g0682 1331 Pfam Helicase conserved C-terminal domain 685 779 IPR001650 -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 191 258 - -
Mtr4g0682 1331 MobiDBLite consensus disorder prediction 574 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0682 Mtr-Chr4 8510010 8516565 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0682 K14780 - gmx:100788201 1880.92