Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0296 ATGGAAAATATTACCAAGAAAGAAGAACAAAACCCTAATTTCTCAGCTTTCCCTTTCAAACCCTATTCTATCCAAATCGATTTCATGAACGCTCTTTATCAATCTCTCAATCATGGCGGTATCTCCATGTTAGAAAGCCCAACCGGTACTGGGAAAACCATGAGTGTAATTTGTAGTGCTTTACAATGGGTACTCGATCAGCGGCAACGAGACGAAGAAGAAATTACTTTAGGGTCTGTGAGTGGGAAGAATGAGAATCAAGGTTCAGATGATGAACCTGATTGGATGAGAGATTTTGTGGTCAACAATAATCATCAGAAAGAAGAAAAGAGAAAGATTAAGAAGGAAAAATTTGTGTCTGTGTTAGGAAAATTTGATAATGATTATGAAAAAAGTAATAAGAGTGGGAATTTGAAGAAGAAAATTGATGAAGTGGGTGATAATGAAGAGGAGTTTTTACTTGAAGAGTATGAGAGTGAAGACGAGGGTAGTAGTGGAGCGTCGAAGAGGAAAGCAAGTAAAAGTGGTTTTAGTTCTACGAGTGAAGACGAGTCTGGTGATGATGAAGAAGAGGAAGAGGAGAAGAAATTGAAGGTTTATTTTTGTAGTAGGACACATTCGCAGCTTTCACAGTTTGTAAAGGAGTTGAGGAAAACGGTGTTTGCTGATGAAATGGGTGTTGTGAGTTTAGGTTCCAGGAAAAATCTTTGTATTAATCAAGAGGTACTTGCACTTGGAAACTCGTCTCGCATAAATGAGAGATGCTTGGAACTCCAAAAGAAAAAGAAAAATGATGCTACAAAAGTTAAGAATTTAAAAGCAGGCACAGGAGCACGCAGAACGAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACGCAGACTACAACATGAATTCAGGAATGAGGTATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTATGGGAACTTGTCCATATTATGGCTCTAGAAGCATGGTTCGGAGAGTTGATCTCGTGGTCCTACCATATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAATCAAACATTGTTATAATAGACGAGGCTCATAATTTGGCTGATTCACTCATCAACATGTATGACTCCAAACTTACTTTATCACAGCTAGAGAATGTGCATCGCCATATAGAGCGGTACTTTGTGAGATTCCGGAACCTTTTGGGACCTGCTAATAGGAGATATATTCAAACTCTGATGGTCCTTATACAAGCATTTCTCCGAGTACTAGTAAATGAGAAAGATGGAAATCTCATGGATTCATGCCGTGATACAGAACAGGCTTCTGAAGAAAGGAGAGCCTCCGATTTTACTATGGCCATCAATGATTTTGTATTTGAACTAAATATTGATAATATCAACTTGGTCAAATTGCTAACGTACATAAAGGAAAGCAATATCATGCACAAGGTTAGTGGTTATGGAGAAAAGATGGCTACATTGGAGAAGGTATCAGCACTTAATATAACAGGGGAACATGGTGAAGATGGAAGCTGTCAGTCCGCTTTCCAGTCATTAGCTGCCATGTTGCTATCACTGGTTAACAAGGACAGTGATGGACGGATGATAATTTCCAGGTCTAGTTCAACAAGCTCAAGGAAGCAAGGTCAAGGATATATTAAATATGTTATGCTCAGTGCAGAGAAGATTTTCTCCGAGATTGTAGATGAAGCACATGCTGTCGTGTTAGTAGGGGGAACACTTCAGCCAATAGAAGAGACAAGGGAGAGACTCTTTCCATGGTTACCACCAAATAAGTTGCATTTCTTTTCTTGTGGTCATATTGTCCCTCCAGAGAGCATTTTGCCAATTGCAGTTTCCTGTGGACCTACTGGTCGCTCTTTTGATTTTAGCTACAGCTCCAGGAGCTCGGCAGACATGATGCAAGAACTAGGTCTTTTGTTATGCAACTTGGTGACTGTGGTTCCTCAAGGAATTGTGGTCTTCTTCCCTTCTTTTGATTATGAAAGTAGAGTGTATGAAAACTGGGAATCTTCTGGCATCCTCGAAAGGATTACAAAGAGGAAGCGTGTCTTTAGAGAGCCTAGAAACAATATGGACGTTGAATCTGTTCTCAAGGAATATAAAGATACCATTTATACTCCATCAAGTGTGAATTCCGAAGTGAACCAAGCATCTCATACTGGTGCAGTACTCCTAGCTGTTGTTGGTGCAAAGTTATCTGAAGGGATCAACTTGAGTGATGGAATGGGTCGATGCATAATCATGGTTGGTCTGCCATATGCTAGCCCATCTGACATTGAGTTATTGGAGAGGATAAAACATATTGATGGTTTTAGAAATTCCAAGTTCCTTGAAAATCCTGGTTTTTCTGCTAGTTATGATGTATATGGTGGAGATATACAAGGTGGCTTTGACATATTAAGAAGTTGCAGTCACAGGGGAAAAGAGTATTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATTCGTCACATCAATGACTATGCAGCTATTTTATTAGTTGACACAAGGTATGCATCTGATTCCTCAAAAAGGAGCTTTACCCACCCAACCACCAAGCTCCCCAACTGGATAAAAGACCGCCTCGTTTCTTCTTCCAGAAACTATGGGGAAGTGCATAAGTTGCTGAGTCAGTTTTTCAAACTCAAAAAGACATGTTGCCAATAG 2724 0.3979 MENITKKEEQNPNFSAFPFKPYSIQIDFMNALYQSLNHGGISMLESPTGTGKTMSVICSALQWVLDQRQRDEEEITLGSVSGKNENQGSDDEPDWMRDFVVNNNHQKEEKRKIKKEKFVSVLGKFDNDYEKSNKSGNLKKKIDEVGDNEEEFLLEEYESEDEGSSGASKRKASKSGFSSTSEDESGDDEEEEEEKKLKVYFCSRTHSQLSQFVKELRKTVFADEMGVVSLGSRKNLCINQEVLALGNSSRINERCLELQKKKKNDATKVKNLKAGTGARRTKASSGCPMLRKRRLQHEFRNEVSQQGPLDIEDLANLGRTMGTCPYYGSRSMVRRVDLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLINMYDSKLTLSQLENVHRHIERYFVRFRNLLGPANRRYIQTLMVLIQAFLRVLVNEKDGNLMDSCRDTEQASEERRASDFTMAINDFVFELNIDNINLVKLLTYIKESNIMHKVSGYGEKMATLEKVSALNITGEHGEDGSCQSAFQSLAAMLLSLVNKDSDGRMIISRSSSTSSRKQGQGYIKYVMLSAEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPWLPPNKLHFFSCGHIVPPESILPIAVSCGPTGRSFDFSYSSRSSADMMQELGLLLCNLVTVVPQGIVVFFPSFDYESRVYENWESSGILERITKRKRVFREPRNNMDVESVLKEYKDTIYTPSSVNSEVNQASHTGAVLLAVVGAKLSEGINLSDGMGRCIIMVGLPYASPSDIELLERIKHIDGFRNSKFLENPGFSASYDVYGGDIQGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFTHPTTKLPNWIKDRLVSSSRNYGEVHKLLSQFFKLKKTCCQ* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0296 907 Pfam DEAD_2 201 389 IPR010614 GO:0003677|GO:0003678|GO:0005524
Mtr4g0296 907 SMART ultradead3 17 447 IPR014001 -
Mtr4g0296 907 MobiDBLite consensus disorder prediction 75 96 - -
Mtr4g0296 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 398 IPR027417 -
Mtr4g0296 907 SMART Cxpdneu3 672 859 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Mtr4g0296 907 Gene3D - 174 424 IPR027417 -
Mtr4g0296 907 TIGRFAM rad3: DNA repair helicase (rad3) 137 792 IPR013020 GO:0003678
Mtr4g0296 907 MobiDBLite consensus disorder prediction 156 190 - -
Mtr4g0296 907 Gene3D - 632 873 IPR027417 -
Mtr4g0296 907 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 12 891 IPR045028 -
Mtr4g0296 907 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 11 418 IPR014013 GO:0005524
Mtr4g0296 907 CDD SF2_C_XPD 618 857 - -
Mtr4g0296 907 Pfam Helicase C-terminal domain 654 868 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Mtr4g0296 907 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 12 891 IPR028331 -
Mtr4g0296 907 Gene3D - 18 86 IPR027417 -
Mtr4g0296 907 SMART deadxpd 13 412 IPR006554 GO:0003678|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0296 Mtr-Chr4 3631783 3637375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0296 K11273 - gmx:106794132 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0296 4 3631783 3637375 Mtr4g0296 4 3631783 3637375 ECH