Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0263 ATGGCCGGTGGTGGTGGTGGTGGTAGCGGTGGTTCATTAGCAGGTTTACAAGATCATGTCAAGTTAGCAAGAGATTACGCTCTTGAGGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTATTGCACAAATCAACAGGCATCTAAACAGTGTTGATGATCCTTTAATTCGTGCAAAATGGATGAATGTTAAGAAAGCTCTTTCGGAGGAAACTGAAGTAGTAAAGCAACTGGATGCAGATAAAAGGGCGTTTAAAGATAACCCTATTGGAAGACGCCCTCCGTCGCCTCCAATTTCTACAAAATCTTCGTTTGTTTTTCAGCCATTAGATGAGTATCCTACTTCATCTAATTCTTCCTTCGATGATCCCGACGTGTGGAGGCCACCTAGTAGAGATACTAGTAGAAGACCCGGAAGGGGTGGTCAAGTCGGTACTCGCAAATCTAATCAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAACAAGTACCACTGGCCGTGGCGCAAAGGCTGGTGGTGCTACTAGCAGGACTAACTCAGGGGCCCGAGGATCAACTCCGGTAAAGAAAGGTGGTGCATCTGGAAAGTCTAGCAACACAGATGCAGTTAATGGTGATGGTGAAGATGGGAAGTCAAATAAGAGAATATACGAAGGTCCTGACCCTGAATTGGCTGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTGAGATGGGATGACGTTGCAGGTCTTACTGAAGCAAAAAGACTTCTAGAAGAAGCCGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGAATTAGAAGACCTTGGAAAGGTGTCCTTATGTTTGGTCCTCCTGGAACTGGAAAGACACTTCTTGCTAAAGCAGTTGCCACTGAATGTGGGACAACGTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAAAGTGAGCGAATGGTGCGGTGCTTGTTTGATCTTGCAAGAGCTTATGCACCAAGTACAATTTTCATTGATGAAATTGATTCCCTATGCAACGCTAGGGGGGCTTCTGGAGAGCATGAATCATCTAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAACAGTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGTTGATCCGGATAAATCTGAAGACCGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCCGGACTGATGGCTATAGTGGAGATGATTTGACAAACGTCTGTCGCGATGCTTCCTTGAATGGAATGAGGCGGAAGATAGCAGGAAAGACTCGTGATGAAATTAAGAGTATGTCTAAGGATGAGATTTCGAAGGATCCTGTTGCCATGTGTGATTTTGAAGAAGCATTGGTAAAAGTCCAACGAAGTGTTTCTCCGGCTGATATTGAACGCCACGAGAAGTGGTTTCATGAATTTGGATCAGCATAA 1590 0.4434 MAGGGGGGSGGSLAGLQDHVKLARDYALEGLYDTSIIFFDGAIAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPLDEYPTSSNSSFDDPDVWRPPSRDTSRRPGRGGQVGTRKSNQDSKWARGATTKTTSTTGRGAKAGGATSRTNSGARGSTPVKKGGASGKSSNTDAVNGDGEDGKSNKRIYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKSMSKDEISKDPVAMCDFEEALVKVQRSVSPADIERHEKWFHEFGSA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0263 529 Gene3D - 419 505 - -
Mtr4g0263 529 MobiDBLite consensus disorder prediction 110 125 - -
Mtr4g0263 529 MobiDBLite consensus disorder prediction 110 221 - -
Mtr4g0263 529 Pfam ATPase family associated with various cellular activities (AAA) 281 418 IPR003959 GO:0005524|GO:0016887
Mtr4g0263 529 ProSitePatterns AAA-protein family signature. 390 409 IPR003960 GO:0005524|GO:0016887
Mtr4g0263 529 Gene3D - 239 519 IPR027417 -
Mtr4g0263 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 526 IPR027417 -
Mtr4g0263 529 CDD AAA 275 418 - -
Mtr4g0263 529 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 14 529 IPR028596 GO:0008017|GO:0008568|GO:0051013
Mtr4g0263 529 SMART AAA_5 277 420 IPR003593 -
Mtr4g0263 529 MobiDBLite consensus disorder prediction 145 209 - -
Mtr4g0263 529 Pfam AAA+ lid domain 440 481 IPR041569 -
Mtr4g0263 529 Pfam Vps4 C terminal oligomerisation domain 482 527 IPR015415 -
Mtr4g0263 529 PANTHER AAA DOMAIN-CONTAINING 11 529 - -
Mtr4g0263 529 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 11 529 - -
Mtr4g0263 529 Gene3D - 11 87 - -
Mtr4g0263 529 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0263 Mtr-Chr4 3122176 3126664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0263 233 521 Calmodulin-binding Proteins AT3G56690 39.933 1.92e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0263 K07767 - mnt:21402373 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0263 4 3122176 3126664 Mtr4g0263 4 3122176 3126664 ECH