Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0245 ATGCGATTAACTTCTTCTTCTTCAATGACACTCGGGTCGGGTTCTATGATATGGTTTCGAAAGGGCATTCGGATCCACGATAACCCAGCACTAGAATACGCCACACGAGGGTGTTCTAATCTGTACCCTCTTTTTGTTATTGATCCGCATTACATGAAACCCGACCCAAATGCGTTCTCGCCTGGTTCATCTCGTGCGGGTCTGAACCGGATAAGTTTCTTGCTTGAGAGTTTGGGTGATCTTGATGTTAATCTTAAGAAGATTGGTTCGAGATTGTTGGTGCTTAAGGGTGATCCCAGTGAAGTTCTTATTCGGTGCTTGAAACAGTGGAACATTGGAAAGTTATGCTTTGAGTATGACACTGATCCATATTATCAGGCTTTGGATATTAAAGTTAAGGACTATGCTCTTAAGGCAGGAATTGAGGTTTTCTCTCCTGTCAGCCACACACTTTTCAATCCAACAGATATTATACAGAAGAATGGAGGGAAGCCGCCACTTAGTTATCAATCGTTTGTCAACCTTGCAGGAGAACCGCCATCTCCTCTCGCAACCAAGTATTCTTCACTTCCTCCAGTTGGCCCTCTTGGAAGTTGTGATATTTCTGAAGTTCCAACAATCAAAGACCTTGGATATGAAGATGATCAACTGGAGTTCTCTCCGTTCAAAGGCGGTGAATCAGAAGCATTGAGGAGATTGGAAGAATGCATGAAAGACAAGACGTGGGTAGCAAACTTTGAGAAACCCAAGGGTAATCCATCTGCATTTCTTAAGCCAGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAATGCATTCAAGATGTATATAAAAGTTTGCCAAAGCATACTTCACCACCTGTTTCTCTGCTAGGACAGTTGTTGTGGCGAGATTTCTTTTACACTGCAGCTTTTGGGACTCCAAATTTCGATAGCATGAAAGACAATAGGATATGCAAGCAGATTCCTTGGAAGGACGATGATAAACTTTTGGAGGCCTGGAGAGATGCTAAGACAGGATTTCCTTGGATTGACGCTATCATGGTCCAGCTACGCCAATGGGGTTGGATGCATCATTTAGCACGACATTCTGTTGCATGTTTTCTAACTCGAGGTGATCTGTTTGTTCATTGGGAAAAGGGACGTGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCGCCAACCACATTTGGTAAGAAGTATGACCCTGATGGTGACTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAAGGCGTACATCTATGAACCATGGACTGCTCCTCCAAGCATCCAGACCAAAGCAAATTGCATAATTGGAAAAGACTATCCAATGCCAGTTGTTTCTCACGACTCTGCAAGTAAAGAGTGCAAAAGAAAAATGGGTGAGGCCTATGCATTAAGTAAAGCACTGAATGGTTTAGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTAGACAAGGGTGAAGAACAAGGAACTAAATCTAAAAGATCTAGGCAGCTACTAATTGGCTGA 1629 0.4168 MRLTSSSSMTLGSGSMIWFRKGIRIHDNPALEYATRGCSNLYPLFVIDPHYMKPDPNAFSPGSSRAGLNRISFLLESLGDLDVNLKKIGSRLLVLKGDPSEVLIRCLKQWNIGKLCFEYDTDPYYQALDIKVKDYALKAGIEVFSPVSHTLFNPTDIIQKNGGKPPLSYQSFVNLAGEPPSPLATKYSSLPPVGPLGSCDISEVPTIKDLGYEDDQLEFSPFKGGESEALRRLEECMKDKTWVANFEKPKGNPSAFLKPATTILSPYLKFGCLSSRYFYQCIQDVYKSLPKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDSMKDNRICKQIPWKDDDKLLEAWRDAKTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPDGDYIRHFLPVLKDMPKAYIYEPWTAPPSIQTKANCIIGKDYPMPVVSHDSASKECKRKMGEAYALSKALNGLVSEDDLKNLRRKLDKGEEQGTKSKRSRQLLIG* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0245 542 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 15 506 - -
Mtr4g0245 542 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 317 541 - -
Mtr4g0245 542 Gene3D HUPs 17 224 IPR014729 -
Mtr4g0245 542 MobiDBLite consensus disorder prediction 522 542 - -
Mtr4g0245 542 Pfam DNA photolyase 16 175 IPR006050 -
Mtr4g0245 542 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 15 197 IPR036155 -
Mtr4g0245 542 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 214 502 IPR036134 -
Mtr4g0245 542 Gene3D - 149 310 - -
Mtr4g0245 542 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 13 151 IPR006050 -
Mtr4g0245 542 Pfam FAD binding domain of DNA photolyase 301 497 IPR005101 -
Mtr4g0245 542 PANTHER CRYPTOCHROME 15 506 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0245 Mtr-Chr4 2888576 2894044 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0245 K02295 - gmx:100780347 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0245 4 2888576 2894044 Mtr4g0245 4 2888576 2894044 ECH