Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0183 ATGTCATCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAGCAGGAGTCAGGATTTTTCTTTAACATGAAATATTTTGAGGATGAAGTTCATAATGGGAACTGGGATGAAGTTGAAAAGTACTTATCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAAAAGTATCTTGAGGCATTGGATAAGCATGATCGGTCGAAAGCTGTAGAGATATTAGTGAAGGATTTGAAAGTGTTTGCCACGTTTAATGAAGAATTGTTCAAGGAAATCACACAGCTACTGACATTGGAGAATTTTAGGGAAAATGAACAGTTGTCAAAGTATGGTGATACTAAGTCTGCGCGGGCAATCATGTTGGTTGAGCTTAAAAAGCTCATTGAAGCTAATCCGTTATTTCGTGACAAATTGCAATTTCCTAACCTTAAAAACTCAAGGTTAAGGACACTCATCAATCAAAGCTTGAATTGGCAGCATCAACTATGTAAGAATCCACGTCCAAATCCTGATATAAAAACTCTTTTTGTGGATCACTCATGCGGACAACCAAATGGTGCACGTGCTCCTTCGCCTGCTAACAGTCCGTTATTAGGATCCTTACCGAAGGCTGGTGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTAATCCGGCAGCAGTGCCAACACAGCTCGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATGCTGCAGTTTCTGGTGCTGGAGCTATAGGTCTTGGTGCTCCATCAATGCCTGGTGCTTTGAAGCATCCGCGTACTCCTCCAATTAATCCTTCTGTTGACTATCCATCTGGTGATTCAGATCATGTGGCTAAGAGAACAAGGCCTATGGGAATAACAGACGAGGTAAATCTACCTGTCAATGTGTTGTCTGGAACATTCCCAGGCCATGGACATAGTCAAGCTTTTAATGCACCTGATGACTTGCCATTGCCGAAGACTGTCACGCGAACTCTGAATCAGGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTGCTAGTTGGCACAAATGTGGGGGGCATTGCCTTATGGGAAGTGGGTTCTAGGGAGAAGTTGGTCTCAAGGAACTTTAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAAGTGTTTCTGTTAACCGTGTGATTTGGAGTCCCGATGGTGCTTTATTTGGTGTTGCATACTCAAGGCACATTGTTCAGATATACTCTTACCATACTGGTGATGATGTTCGGCAGCACTTAGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTTGCATTTTCCCATCCAAATAAGCAACTGTGTGTTATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGTATCGGGAGCAAAGCAATATACATTTGAAGGTCACGAGGCTCCGGTTTATTCTGTCTGTCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCGCTAGACGGCAAAATAAAAGCATGGTTGTATGACAATTTGGGATCACGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTATAGTGCTGACGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGATGGAGAATCATCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGAACTTACCAAGGATTTCGTAAACGATCTATGGGCGTTGTGCAGTTTGATACTACCAAAAATCGATTTTTGGCTGCCGGCGATGATTTCTCCATTAAGTTCTGGGATATGGACAATATTCAACTTTTGACTACAGTTGATGCTGATGGGGGTCTACCTGCAAGTCCACGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCCGTTTCAGCAAATGACAATGGAATCAAAATTGTAGCCAATGCTGATGGTATTCGTTTATTGCGTACATTAGAGAATAATTCTATGTATGATGCGTCGAGAGCATCAGAGATGGCAAAGCCTACAATAAACTCAATGTCTTCTGCTGCCGCCGCAACTAGTGCTGCTCTAGCTGAGAGAGCCTCATCTGTAGCAGCTATTGCTGGAATGAATGGAGATACTCGAAGCATGGGCGATGTTAAACCTAGAATAAGTGAAGAAGCCAATGACAAGTCAAAGATATGGAAACTCACTGAAATCAATGAACCATCTCATTGTAGATCCTTGAAGCTACCAGAGAATGTTAGAGTAAACAAGATATCGAGGTTGATTTATACAAATTCAGGAAATGCTATTCTAGCATTAGCATCAAATGCCATTCACCTTCTCTGGAAATGGCCGCGAAATGAACGTAACTCATCTGGCAAGGCCAATGCTTCCGTGCCAGCTCAGTTGTGGCAACCATCGAGCGGCATCCTGATGACTAATGACATCGCTGATAGCAATCCTGAAGATTCTGTTCCATGCTTTGCTCTGTCCAAAAATGATTCGTATGTAATGTCTGCATCAGGAGGGAAGATATCCTTGTTCAACATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCGCCACCTGCGGCTACTTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCCATTCAGATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATAACCGGTCTTGCTTTCTCTCATGTATTGAATGTTCTTGTTTCATCTGGAGCGGATGCTCAGATTTGTGTGTGGAACACTGACGGATGGGAAAAACAGAAGACTAGATTCTTGCAGCTACCTCCTGGGAGGACTCCATCAGCACAGTCAGATACACGTGTACAGTTTCACCAGGATCAGATACAGTTCTTGGTCGTACACGAAACTCAGCTCGCCATTTTTGAAGCAACTAAACTAGAATGTCTAAAGCAGTGGGCCCCACGGGATTCTTCTGCACCAATATCGCATGCAACTTTTTCATGCGACAGCCAGCTGATATATGCAAGCTTTTTAGATGCTACAGTCTGTGTATTTAATGCTTCAAATCTCAGATTGCGGTGTCGTATCAATCCTCCTGCTTATCTTCCTGCAAGTGTCAGCAGCAATTCAAACGTACAACCACTAGTAATTGCAGCACATCCACATGAAGCAAATCAATTTGCTGTAGGACTATCAGATGGTGGAGTTCATGTGTTTGAGCCACTTGAATCCGAAGGCAAATGGGGCGTACCGCCTCCAAACGAGAATGGATCATCTAGCAATAATGTAGCAGTAGCTACTTCAGTTGGACTTTCTTCAGACCAAGCACAAAGATGA 3417 0.4246 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLPLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVATSVGLSSDQAQR* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0183 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Mtr4g0183 1138 Gene3D - 804 1101 IPR015943 GO:0005515
Mtr4g0183 1138 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1138 IPR027728 GO:0006355
Mtr4g0183 1138 MobiDBLite consensus disorder prediction 1113 1138 - -
Mtr4g0183 1138 SMART Lish 4 36 IPR006594 GO:0005515
Mtr4g0183 1138 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 524 1056 IPR011047 -
Mtr4g0183 1138 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mtr4g0183 1138 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 953 - -
Mtr4g0183 1138 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mtr4g0183 1138 SUPERFAMILY WD40 repeat-like 353 668 IPR036322 GO:0005515
Mtr4g0183 1138 Gene3D - 551 687 IPR015943 GO:0005515
Mtr4g0183 1138 Gene3D - 332 546 IPR015943 GO:0005515
Mtr4g0183 1138 CDD WD40 360 668 - -
Mtr4g0183 1138 MobiDBLite consensus disorder prediction 1103 1138 - -
Mtr4g0183 1138 SMART WD40_4 629 670 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 831 868 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 1005 1046 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 496 537 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 914 953 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 871 911 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 540 583 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 586 626 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 452 493 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 407 446 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 1059 1100 IPR001680 GO:0005515
Mtr4g0183 1138 SMART WD40_4 346 385 IPR001680 GO:0005515
Mtr4g0183 1138 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Mtr4g0183 1138 Pfam WD domain, G-beta repeat 920 953 IPR001680 GO:0005515
Mtr4g0183 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 962 IPR001680 GO:0005515
Mtr4g0183 1138 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Mtr4g0183 1138 SMART ctlh 34 92 IPR006595 -
Mtr4g0183 1138 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0183 Mtr-Chr4 2216164 2224741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0183 457 654 Miscellaneous Gene Families AT5G08390 24.138 6.98e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0183 - - gmx:100795759 2080.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0183 4 2216164 2224741 Mtr4g0183 4 2216164 2224741 ECH