Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4490 ATGGATGTCAGTGGCAATTCTCTTCCGTCTTCTGCACCTGATGGGGTAAAGAGAAAAGTATGCTATTTCTATGATCCTGAGGTTGGGAATTATTATTATGGCCAAGGTCATCCCATGAAGCCACATCGTATCCGCATGACACATGCCCTTCTTGCCCACTATGGATTGCTTCAGCACATGCAGGTCCACAAGCCTTTTCCTGCTAGAGACAGGGACCTTTGCCGTTTTCATGCTGATGATTATGTTTCATTTCTTCGAAGCATAACCCCTGAAACACAACAGGATCATATGAGACAACTCAAACGCTTTAACGTTGGTGAAGATTGTCCAGTCTTTGATGGCCTATACTCTTTCTGTCAAACTTATGCTGGAGGTTCAGTTGGTGGTGCTGTCAAGTTAAATCACGATCAATGTGATATTGCTGTTAACTGGGCTGGTGGACTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAACAGCACGAGCGTGTTCTGTACGTGGACATTGATATCCACCATGGAGATGGTGTGGAGGAAGCTTTCTACACTACTGATAGAGTCATGACTGTTTCTTTCCATAAATTTGGTGATTATTTTCCTGGTACCGGCGACTTGCGTGATATTGGATATGGAAAGGGAAAATACTACTCTCTTAATGTTCCACTTGATGACGGCATTGATGACGAGAGTTATCATTTGTTGTTCAAACCTTTAATCTGCAAAGTAATGGAAATCTTTAGGCCCGGTGCAGTTGTTCTCCAGTGTGGTGCAGACTCTTTATCTGGAGACAGGTTGGGATGCTTTAATCTTTCAATTAGGGGTCATGCAGAGTGTGTCAGATACATGAGATCATTCAATGTTCCCCTCTTGCTACTAGGTGGTGGCGGTTACACCATTCGGAATGTTGCTCGGTGTTGGTGCTATGAGACGGGAGTTGCTCTTGGGATAGAAGTTGATGACAAAATGCCAGAGCACGAGTATTATGAATATTTCGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAAAATACCCGACATTTACTTGACAATATCCGATCTAAGCTACTTGAGAATCTTTCGAAGCTGCAACATGCTCCCAGTGTTCAATTTCAGGAAAGGCCTCCTGATTGTGATCTTGGAGAGGAATTTGACGATCATGAAGATAGAGATGAGCATTGGGATCCAGATTCTGGCATGGACGTTGATGTTGAACGCGATATTCTCCAAAGCAAAGTCAAGAGAGAAATTGTTGAACCTCCGCTCAATGATCTGGAGGACCTGAAAAGAACTAGAGAGCACTCAAGGGTCTCGGATACTGCTGTAGTTGAAACAAGCGTGAAGGCTTTAGATATTTGTTCTCAGCCAGTTGATGAAGATAATGTGAAAGACGAAGAGAATATTGTGACTGATTTGGCCATAGAGACGGATCTGAAGTGA 1497 0.4302 MDVSGNSLPSSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVSFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPLDDGIDDESYHLLFKPLICKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPSNMENKNTRHLLDNIRSKLLENLSKLQHAPSVQFQERPPDCDLGEEFDDHEDRDEHWDPDSGMDVDVERDILQSKVKREIVEPPLNDLEDLKRTREHSRVSDTAVVETSVKALDICSQPVDEDNVKDEENIVTDLAIETDLK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4490 498 PRINTS Histone deacetylase signature 39 56 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 72 90 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 103 120 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 124 144 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 165 181 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 224 237 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase signature 241 259 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 SUPERFAMILY Arginase/deacetylase 18 382 IPR023696 -
Mtr3g4490 498 MobiDBLite consensus disorder prediction 390 419 - -
Mtr3g4490 498 PANTHER HISTONE DEACETYLASE 19 3 491 - -
Mtr3g4490 498 PANTHER HISTONE DEACETYLASE 3 491 - -
Mtr3g4490 498 Pfam Histone deacetylase domain 37 325 IPR023801 -
Mtr3g4490 498 Gene3D Histone deacetylase domain 16 389 IPR037138 -
Mtr3g4490 498 PIRSF HDAC_I_euk 5 470 IPR003084 GO:0004407|GO:0016575
Mtr3g4490 498 PRINTS Histone deacetylase superfamily signature 146 169 IPR000286 -
Mtr3g4490 498 PRINTS Histone deacetylase superfamily signature 178 193 IPR000286 -
Mtr3g4490 498 PRINTS Histone deacetylase superfamily signature 263 273 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4490 Mtr-Chr3 58899219 58914272 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4490 K06067 - gmx:100795375 937.562