Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4484 ATGATGATGAGGTTGGCACTAGTAGTAACAACAGCAGTTCTACTTGTAATTATAGGATGCTCCTTTGCGGAGCAATGCGGTAAACAAGCTGGGGGTGCGTTGTGCCCAGGGGGATTATGTTGTAGCAAGTTTGGTTGGTGTGGATCAACCGGCGACTACTGTGGTGATGGTTGTCAGAGTCAATGTAGTGGAAGCAGCGGTGACCTTGGTAGCCTCATCTCAAGGGACACCTTCAACAATATGCTCAAGCACCGTGACGACAGTGGGTGTCAGGGAAAAAGATTGTACACCTATGATGCTTTCATCTCAGCTGCCAAGGCTTTCCCCAACTTTGCCAATAATGGAGATACTGCAACTAAAAAAAGAGAGATTGCTGCTTTCTTGGGTCAAACATCACACGAAACCACAGGTGGATGGGCAACTGCACCTGATGGCCCATATGCTTGGGGATACTGCTTTGTGAGAGAACAGAATCCCAGCAGCACATACTGCCAACCAAGCTCTGAATTCCCATGTGCTTCTGGGAAGCAATACTACGGTAGGGGTCCCATCCAGATCTCTTGGAATTACAACTATGGACAGTGTGGAAGAGCAATTGGTGTTGACTTGCTCAACAATCCAGACCTCGTAGCCACCGACCCTGTTATATCCTTCAAGACCGCTCTATGGTTCTGGATGACGCCCCAGTCACCTAAGCCATCCTGCCATGACGTTATCACCGGAAGATGGAGTCCTTCCAGTGCAGATCGTGCGGCAGGGAGGCTCCCGGGATACGGTACGGTGACCAACATAATAAACGGAGGGCTTGAATGCGGAAGAGGACAGGATGGAAGAGTGCAGGATCGAATTGGATTTTACAAGAGATATTGTGACATACTTGGAGTTGGATATGGAGACAATCTTGATTGTTTTTCTCAAAGGCCTTTCGGATCTTCACTTTCACTATCATCCCTCTTCCTCAACTCCATCGACACCTAG 978 0.4847 MMMRLALVVTTAVLLVIIGCSFAEQCGKQAGGALCPGGLCCSKFGWCGSTGDYCGDGCQSQCSGSSGDLGSLISRDTFNNMLKHRDDSGCQGKRLYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVREQNPSSTYCQPSSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGRWSPSSADRAAGRLPGYGTVTNIINGGLECGRGQDGRVQDRIGFYKRYCDILGVGYGDNLDCFSQRPFGSSLSLSSLFLNSIDT* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4484 325 Pfam Chitinase class I 72 303 IPR000726 GO:0004568|GO:0006032|GO:0016998
Mtr3g4484 325 Gene3D Endochitinase, domain 2 155 212 - -
Mtr3g4484 325 ProSitePatterns Chitinases family 19 signature 2. 216 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Mtr3g4484 325 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Mtr3g4484 325 PANTHER CHITINASE 2 7 312 - -
Mtr3g4484 325 ProSiteProfiles Chitin-binding type-1 domain profile. 23 64 IPR001002 GO:0008061
Mtr3g4484 325 PANTHER CHITINASE-RELATED 7 312 - -
Mtr3g4484 325 Gene3D - 77 309 - -
Mtr3g4484 325 ProSitePatterns Chitin recognition or binding domain signature. 35 54 IPR018371 GO:0008061
Mtr3g4484 325 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Mtr3g4484 325 SUPERFAMILY Plant lectins/antimicrobial peptides 25 65 IPR036861 GO:0008061
Mtr3g4484 325 SMART ChitinBD_3 25 62 IPR001002 GO:0008061
Mtr3g4484 325 CDD chitinase_GH19 73 303 - -
Mtr3g4484 325 Gene3D - 23 65 IPR036861 GO:0008061
Mtr3g4484 325 SUPERFAMILY Lysozyme-like 69 310 IPR023346 -
Mtr3g4484 325 CDD ChtBD1_GH19_hevein 24 63 - -
Mtr3g4484 325 Pfam Chitin recognition protein 25 62 IPR001002 GO:0008061
Mtr3g4484 325 PRINTS Chitin-binding domain signature 33 41 IPR001002 GO:0008061
Mtr3g4484 325 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Mtr3g4484 325 PRINTS Chitin-binding domain signature 48 55 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4484 Mtr-Chr3 58830278 58831551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4484 23 318 Glycoside Hydrolase AT3G12500 69.637 8.16e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4484 K20547 - qsu:111994365 496.508