Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4479 ATGTGGTCATCATCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACACTTTCATCAGAATCCCTACCCACCGGCATCATCATCATCATCATCATCATCTCTTTCTTCTTCAGTCACCCAAAACAACTACAACAAGACACTGTATTTTGTCTTCTTCAACGGCACTCCTTGATTTCAAATTTGATGTTGCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGCCTCTCAGGCACACTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCCGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTAGTCAATAACAAGCTCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAATATGCTGCTGCTGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGACGACGAGCCTACCTCTGAGGAACTTGAAGATGTAGAGGAACAGCTTTACGATACTAGTATAGATGCAAGATCCGGGCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAGGTCTGGATCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTACATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGACCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGTGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAGTTGGGATCAACCAGAGTCTTAAACTTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAACAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTACAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTTGTTTCATAA 1719 0.4363 MWSSSSSCLLPQFICNPDTFIRIPTHRHHHHHHHHLFLLQSPKTTTTRHCILSSSTALLDFKFDVAPAESENSPPWPYASQAHSSSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLVNNKLPQHNQQPPQLPSTPENLLLKWVQHMEAAEYAAAAVSIATGPAGPDIMEHLHISPNQEDDFNDDDEPTSEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFVS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4479 572 Gene3D - 492 572 IPR036388 -
Mtr3g4479 572 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 336 560 IPR014284 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PIRSF Sigma_factor_SigC 2 572 IPR016262 -
Mtr3g4479 572 CDD Sigma70_r4 500 558 - -
Mtr3g4479 572 PRINTS Major sigma-70 factor signature 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PRINTS Major sigma-70 factor signature 386 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PRINTS Major sigma-70 factor signature 510 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PRINTS Major sigma-70 factor signature 531 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PRINTS Major sigma-70 factor signature 546 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 ProSitePatterns Sigma-70 factors family signature 2. 531 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 Gene3D - 411 488 IPR036388 -
Mtr3g4479 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 411 484 IPR013324 -
Mtr3g4479 572 Pfam Sigma-70 region 3 419 493 IPR007624 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 259 408 IPR013325 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 Gene3D RNA Polymerase Primary Sigma Factor 174 410 - -
Mtr3g4479 572 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 38 571 - -
Mtr3g4479 572 Pfam Sigma-70, region 4 506 558 IPR007630 GO:0003700|GO:0006352|GO:0006355
Mtr3g4479 572 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 38 571 - -
Mtr3g4479 572 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 470 569 IPR013324 -
Mtr3g4479 572 Pfam Sigma-70 region 2 338 407 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4479 Mtr-Chr3 58790663 58794440 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4479 - - aprc:113864822 691.034