Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4478 ATGAGAAAGACGAAGAAGAGCAGCAACAACAACAGTAGTACTTCAGATTCAGAGTGTTGTCAACATGGTGATGCTGATGCTTCTTCTCCTAAGCAGCTTGATGATGGTTTCTTTGAAATCGAAACCATTCGCCGTAAAAGGCTCCGCAAGGGTGAGGTCCAGTACCTGATTAAATGGCGTGGCTGGCCGGAGACTGCCAACACATGGGAACCTCTTCATAACCTACAGTCTGTTCCCGATCTCATTCATGCCTTTGAGGAGAGCCTCAAATCAGCAGCAACATCAGCAGCAGGAGGAGCAAAACCTCTTCGCAAGCGCACCAGACGCACCACCACCACCCACCTTCCACCACAAACTACTAATGCTCATCCTACCCCCCTCCCAAATTCACAACAACACATTCCTCACCAAAATCAACCAACATCAAACCTCCCCCAACAAACACCCATTCATGCTCAATCCAATGGGAATTCCCTTCACCGCAGAGGAACCAACCGCAGAAAATCTGCTTCCGTTAAAAGGTTCAAGAAAGACGAATCTTCTCCTACAAACAATGCACTTGGCTCCACTGCTCCTTATGTGGGGAATAATATCAATACTCATCAAATCATCACCGGTGCTAAAACTGCCAGCAATATTGTCAAGATTATAAAGGCTATAGGCTATTCAACTTCTCTATCTTGCTACAAGCAGGATATTTTAGTCACCTTTATGGCTATGAGGTCTGATGGAACAGAAGTTATGGTGGATAACAAATATCTCAAGGCAAACAATCCACAACTGCTGATCAATTTCTATGAGCAGCATCTCCGGTACAATCCTACTTAA 828 0.4505 MRKTKKSSNNNSSTSDSECCQHGDADASSPKQLDDGFFEIETIRRKRLRKGEVQYLIKWRGWPETANTWEPLHNLQSVPDLIHAFEESLKSAATSAAGGAKPLRKRTRRTTTTHLPPQTTNAHPTPLPNSQQHIPHQNQPTSNLPQQTPIHAQSNGNSLHRRGTNRRKSASVKRFKKDESSPTNNALGSTAPYVGNNINTHQIITGAKTASNIVKIIKAIGYSTSLSCYKQDILVTFMAMRSDGTEVMVDNKYLKANNPQLLINFYEQHLRYNPT* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4478 275 Gene3D - 15 90 - -
Mtr3g4478 275 Pfam Chromo (CHRromatin Organisation MOdifier) domain 38 87 IPR023780 -
Mtr3g4478 275 ProSiteProfiles Chromo and chromo shadow domain profile. 38 97 IPR000953 -
Mtr3g4478 275 MobiDBLite consensus disorder prediction 112 160 - -
Mtr3g4478 275 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 15 149 - -
Mtr3g4478 275 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 136 275 - -
Mtr3g4478 275 ProSitePatterns Chromo domain signature. 55 75 IPR023779 -
Mtr3g4478 275 SMART ChS_2 202 275 IPR008251 GO:0005634
Mtr3g4478 275 CDD CD_CSD 38 87 - -
Mtr3g4478 275 MobiDBLite consensus disorder prediction 93 192 - -
Mtr3g4478 275 SUPERFAMILY Chromo domain-like 29 91 IPR016197 -
Mtr3g4478 275 MobiDBLite consensus disorder prediction 7 22 - -
Mtr3g4478 275 MobiDBLite consensus disorder prediction 1 32 - -
Mtr3g4478 275 Gene3D - 211 274 - -
Mtr3g4478 275 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 15 149 IPR044251 GO:0006325|GO:0031507
Mtr3g4478 275 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 136 275 IPR044251 GO:0006325|GO:0031507
Mtr3g4478 275 SMART chromo_7 37 90 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4478 Mtr-Chr3 58777007 58781708 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4478 - - cam:101503633 266.159