Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4475 ATGACGATTCATTCTGTAGTGATACAGAAGCTTCTTAGCACAAATGCACACATTGGTCGTCAAGTCGCCACTCATCATTTCAAAGATTACACTTACGGCCTTCGCAACAGAATGGCAATCATCGATTCCGATAAGACTTTGATTTGTATGCGAAGTGCTATCAATTTCATCTCTTCCCTTGCTCGCCATAATGGTCGATTCATGTTCATCAACACCAATCCTCTCTTCGATGAAATCTTCGAACTTATGTCCAAAAAGGTTGGATGCTACAGTCCCTCTTCCAATTCTCTCTGGCGTACTGGTGGATTTCTCACCAACAGCAACAGTCCCAAGAAGTTTCGATCTCGCAACAAGAAACTTTGCTTCGGTCCCACTCAGCCTCCCGATTGCATCGTCATTGTCGATACTGAGAGCAAGTCTTCTGTTATTGACGAGGCTTTCAAACTTCACATTCCAATTGTCGCTCTTGTTGATTCTGCTATGCCTCTCCATACTTTCAGCCGCATTGCTTATCCCATTCCCGTTAACCCCTCTGTTCAATTTGTCTATCTTTTCTGTAATTTGATTACCAAAACACTGCTTCTCGAGAAGAACAACAACAACAACAACTCTAATATCAAACTTCTTGATGATGATCATCATCTGAGGGAAAAACAAGCTGCCAAGGAGAAGAGTAATTTGGCTGCTAAGCTTGGCGTCACTGTTATCCCCTACGATGCTATATCACCCTTGCCCCAAGATGTTGAACAAACTAAGAATCTTTTGGACAAGCTTGTTGTTTTGAAGCTCAATCATGCCTCAGGAACAAATATGGGTTTTCAAAACCCCAAATCTGCAATGGATATTTGTGACGGACAGACATTTTTAGACTTAATCATTAACCAGATTGAGACCCTCGACTCCAAGTACGGAAGCCGGGTTCCATTGCTGATTTTTAACAAAGATGACACTCATGATAGTACTTTAAAGGTTTTGGAAAAGTATTCGGAATCCAGCATTGATGTGCGCACTTTTAAGCAGGGTAAAGGTCCAGAGCTAACATTATCAGATGGACATAGCAGTAAGGAGGAAGTGCATACATTTGACAATGGTGATATATTCCGTTCACTAATGATAGGTGGAACCCTGGATTTATTATTGTCACAGGGAAAGGAGTATATCTTTGTGATGAAGTGCGACAATGTGGGAACTATCATTGATCCAAATATACTAAATCATTTGATGACAAATGCTATTGATTATTGCATGGAGGTAACACCAAGCCATTCGTCTAATGTGATCTTAACTCCAATGAATTTTAAGCTTAAGGAGATTGTTCGAAACCAAGATAAAGATTTGAAGGACAAATGCAAACTTATTGATACAACAAACATGTGGGTGAGTTTAAGAACCATTAAGAGGCTTTTTGACACTAATAGACTAAAGCTCCAGATGCCCCCAATCTCAAAGGAGGATGACTATGATCAAACTCTTCTACAAGGAACAGATGCTGGACAGGCAGTACAGTTCTTTGATAATGTGATTGGTGTCTCCATACCCGAATCTCGTTTTGTTCCCTTGGATACAACATCAGATTTACTGCTTCTGCAGTCAGATCTATACACTTCTAGAGAAGGTGTTTTAGCTCGCAATCCAGCTAGAACCGACGCTTTAAATCCTGTGATAGACTTGGGACCCGAATATGAAAAGATTGCTGACTTTCGAAGTCGGTTCAAATCCATTCCAAGTATCGTGGGGTTGGATAGTTTGATTGTGAGAGGCGACGTGTGGTTTGGGGCTAATATTACTTTGAAGGGGCACGTGACTATTGTTGCAAAACCGGGCTTGAAATTGGAAATTCCAGATGGAGTTGTGATTGAGAATAAGGAGATCAACGACATTGCAGATATCCAAGAATGA 1899 0.4086 MTIHSVVIQKLLSTNAHIGRQVATHHFKDYTYGLRNRMAIIDSDKTLICMRSAINFISSLARHNGRFMFINTNPLFDEIFELMSKKVGCYSPSSNSLWRTGGFLTNSNSPKKFRSRNKKLCFGPTQPPDCIVIVDTESKSSVIDEAFKLHIPIVALVDSAMPLHTFSRIAYPIPVNPSVQFVYLFCNLITKTLLLEKNNNNNNSNIKLLDDDHHLREKQAAKEKSNLAAKLGVTVIPYDAISPLPQDVEQTKNLLDKLVVLKLNHASGTNMGFQNPKSAMDICDGQTFLDLIINQIETLDSKYGSRVPLLIFNKDDTHDSTLKVLEKYSESSIDVRTFKQGKGPELTLSDGHSSKEEVHTFDNGDIFRSLMIGGTLDLLLSQGKEYIFVMKCDNVGTIIDPNILNHLMTNAIDYCMEVTPSHSSNVILTPMNFKLKEIVRNQDKDLKDKCKLIDTTNMWVSLRTIKRLFDTNRLKLQMPPISKEDDYDQTLLQGTDAGQAVQFFDNVIGVSIPESRFVPLDTTSDLLLLQSDLYTSREGVLARNPARTDALNPVIDLGPEYEKIADFRSRFKSIPSIVGLDSLIVRGDVWFGANITLKGHVTIVAKPGLKLEIPDGVVIENKEINDIADIQE* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4475 632 ProSitePatterns Ribosomal protein S2 signature 1. 8 19 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 SUPERFAMILY Ribosomal protein S2 8 200 IPR023591 -
Mtr3g4475 632 Gene3D Hexapeptide repeat proteins 521 630 - -
Mtr3g4475 632 Gene3D - 2 193 - -
Mtr3g4475 632 Pfam UTP--glucose-1-phosphate uridylyltransferase 234 598 IPR002618 GO:0070569
Mtr3g4475 632 Pfam Ribosomal protein S2 11 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 Pfam Ribosomal protein S2 126 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 SUPERFAMILY Nucleotide-diphospho-sugar transferases 205 613 IPR029044 -
Mtr3g4475 632 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 630 - -
Mtr3g4475 632 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 520 IPR029044 -
Mtr3g4475 632 CDD RPS2 11 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mtr3g4475 632 PANTHER - 1 630 IPR016267 GO:0003983|GO:0006011
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4475 Mtr-Chr3 58745570 58755643 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4475 K00963 - gmx:100812583 845.114