Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4462 ATGAATATGTCAATTGATGCTCATTTCCTTCAGGTGAACCAAAACATGCCAACTCTTCATTCTGATCATGTCTATGCCAACACTAAGTATAACAACAATCAACAGAGCGACGAGGTTGATCGCTTTTTAATATCACAGAACGAGAAATTGAGACTATTGTTGCAAGAGCAGCGAAGGACAATATTGAAGAAGGTAGAATATGATGTGTTTCATATACTAAGACAAAAGGATGAACAAATTGCACAAGCGACGAAGAAAAGGATGGAGTTGGAACAATTTTTGACAAGACTAGAGACAGAGAATCAATCATGGCGGAGAGCTGCACATGAAAATGAAGCTATGGTGTTATCGCTCAATAACGCCTTAGAATCTATCAAAGAAATTAGAGCATTGGTAGTAGAAGATGTAGAGTCATGTTGTGATCAAGAAACTACCGGGCTGAACATGATTTGCAAATGTTGTCATTCAAGGATGTCGTCTTTTATGTTCCTTCCTTGCAGGCATCTTTGTTCGTGTAAAGCGTGTGAACCTTCTCTCCAAGCATGTCCTGTGTGCCTCATGCCAAAGAGATCTACTATAGAGACTCTCTTTCTCTAG 597 0.3936 MNMSIDAHFLQVNQNMPTLHSDHVYANTKYNNNQQSDEVDRFLISQNEKLRLLLQEQRRTILKKVEYDVFHILRQKDEQIAQATKKRMELEQFLTRLETENQSWRRAAHENEAMVLSLNNALESIKEIRALVVEDVESCCDQETTGLNMICKCCHSRMSSFMFLPCRHLCSCKACEPSLQACPVCLMPKRSTIETLFL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4462 198 Pfam Zinc finger, C3HC4 type (RING finger) 149 190 - -
Mtr3g4462 198 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 27 197 IPR017066 -
Mtr3g4462 198 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 27 197 - -
Mtr3g4462 198 PIRSF SBP1_RNase_bind 6 198 IPR017066 -
Mtr3g4462 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 197 IPR013083 -
Mtr3g4462 198 Coils Coil 73 100 - -
Mtr3g4462 198 ProSiteProfiles Zinc finger RING-type profile. 151 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4462 Mtr-Chr3 58624663 58625947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4462 150 185 Miscellaneous Gene Families AT2G21380 44.444 1.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4462 K19042 - gmx:100776899 194.126