Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4378 ATGGCGACCTCAACCCCAAACAGAACCGTCGAGCCTCCGTCTTCCGCCACCGGAACACCTCTACCTCCGACTACTACTCCGCCTCCCTCGAACCCACCACAACCGCCTCCGGTGGCGAAACCGGAAGTCCCATTACCAGAAGCCAAAACCTCTAGCGACGCCAACTTAATCCTTGTCCCTAGCCACTCAAGATGGTTCTCGTGGGATTCCATTCACGAATGCGAAATCCGCAACATTCCCGAATCTTCCAAGAACCCTAGGGTTTACAAATACTACAGAAACTCTATTGTCAAGTTTTTCAGATTCAATCCTAACAGGAAAATCACCTTCACCGATGTTCGCAAAACCCTAGTCGGTGACGTTGGTTCCATTCGAAGAGTGTTTGATTTTCTTGAAGCTTGGGGTTTAATCAATTATCATCCTTCTTCTTCGCTCAGTAAACCTCTCAAATGGGAAGATAAAGACACCAAACCCGACGCAGCATCGAATTCCGCAGAATCTCCTTCTCCGGCACCTGTCAAAGAAGCTAAGAGAATCTGTAGTGGCTGCAAAAATCTCTGTGTCATGGCTTGCTTTGCCTGTGAAAAGAATAATATGACGTTGTGTGCGAGGTGTTTTATTCGTGGAAATTATCGAATTGGTATGAGTAATACAGAATTCAAGAGAGTGGAGATAAGCGAGGAGACGAAAAATGAATGGACTGAGAAGGAAACACTGAATCTTCTTGAAGCTATTACGAATTTCGGTGATGATTGGAAGAGGGTTGCTCATCAAGTTGTTGGTAGGACCGACAAGGAATGCGTTGCTCGTTTTTTAGAGCTTCCTTTTGGTGATCAGTTTCTGCATTATCCACACTCCGAGTCTGCTCCTTGCATTGATGATGGTTCTGATCAGTTGAAGCCTCCCGTTGCTGCTGAATGTGAATCCGAAACTGTTCCGTCGGATAAATCTAGTAAGAGAATGTGTCTCACACCTCTTGCGGATGCTAGCAATCCTATCATGGCTCAGGCTGCTTTCCTTTCTGCTTTGGCAGGGACGGAGGTTGCGCAAGCTGCAGCTCAAGCTGCTCTGACAAGTTTGTCCAATGTTTACAAATCAACTAGAATTAATTACCGGTCATTTCCAAGGAATACATTGCAGCAAGATGCTGCTGTTGCATCCAATGGTGGTAATGCTTCAGATTCTATCCAAGGATCTTTATTGCGTGCAAATTTACAGCTTGAGAAGGAAGAATCAGACGTGGAAAAAGCAATTTCTGAGGTTACAGAAGTTCAGATGAAAAATATCCAGGACAAGCTTATCAATTTTGAGGATTTAGACGTGCTAATGGAAAAAGAACGCCAGCAGTTGGAGCAAACGAAGAGTTTGTTTTTCCTTGATCAGCTCAATCTTTTATTTCGTAAAACATCTGCACCAACGACCGGAGAAGGCAATCATGTAAAAAGGAATTGA 1452 0.4449 MATSTPNRTVEPPSSATGTPLPPTTTPPPSNPPQPPPVAKPEVPLPEAKTSSDANLILVPSHSRWFSWDSIHECEIRNIPESSKNPRVYKYYRNSIVKFFRFNPNRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLSKPLKWEDKDTKPDAASNSAESPSPAPVKEAKRICSGCKNLCVMACFACEKNNMTLCARCFIRGNYRIGMSNTEFKRVEISEETKNEWTEKETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYPHSESAPCIDDGSDQLKPPVAAECESETVPSDKSSKRMCLTPLADASNPIMAQAAFLSALAGTEVAQAAAQAALTSLSNVYKSTRINYRSFPRNTLQQDAAVASNGGNASDSIQGSLLRANLQLEKEESDVEKAISEVTEVQMKNIQDKLINFEDLDVLMEKERQQLEQTKSLFFLDQLNLLFRKTSAPTTGEGNHVKRN* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4378 483 CDD SANT 232 274 IPR001005 -
Mtr3g4378 483 Gene3D - 63 143 IPR036388 -
Mtr3g4378 483 MobiDBLite consensus disorder prediction 1 15 - -
Mtr3g4378 483 SUPERFAMILY Homeodomain-like 229 279 IPR009057 -
Mtr3g4378 483 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 267 IPR017930 -
Mtr3g4378 483 ProSiteProfiles SANT domain profile. 228 279 IPR017884 -
Mtr3g4378 483 SMART sant 229 277 IPR001005 -
Mtr3g4378 483 ProSiteProfiles Myb-like domain profile. 225 275 IPR001005 -
Mtr3g4378 483 PANTHER SWI/SNF COMPLEX-RELATED 1 477 - -
Mtr3g4378 483 MobiDBLite consensus disorder prediction 148 172 - -
Mtr3g4378 483 Pfam Myb-like DNA-binding domain 230 273 IPR001005 -
Mtr3g4378 483 ProSiteProfiles SWIRM domain profile. 57 148 IPR007526 GO:0005515
Mtr3g4378 483 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 1 477 - -
Mtr3g4378 483 SUPERFAMILY Homeodomain-like 54 148 IPR009057 -
Mtr3g4378 483 MobiDBLite consensus disorder prediction 16 43 - -
Mtr3g4378 483 Gene3D - 228 278 - -
Mtr3g4378 483 Coils Coil 400 427 - -
Mtr3g4378 483 Pfam SWIRM-associated region 1 402 465 IPR032451 -
Mtr3g4378 483 MobiDBLite consensus disorder prediction 1 49 - -
Mtr3g4378 483 Pfam SWIRM domain 60 139 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4378 Mtr-Chr3 57693944 57696606 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4378 K11649 - gmx:100783679 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4378 3 57693944 57696606 Mtr3g4378 3 57693944 57696606 ECH