Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4356 ATGGCAGCACCACCGAACATGGATCAGTTCGAAGCGTTTTTCAGAAGAGCAGATTTAGATGGAGATGGTAGAATCAGTGGTCCTGAGGCTGTCAATTTCTTTCAAGGATCCAACTTGCCTCAAAACGTTCTTGCTCAGGTATGGATGCATGCTGATCAGGCCAAAACTGGTTTCCTTGGGAGGAATGATTTTTATAATGCTTTGAAATTAGTAACTGTTGCACAGAGTAAGCGAGATTTAACTCCGGATATTGTGAAGGCAGCGTTATTCGGTCCTGCTGCTTCTAAAATCCCTGCACCGCAGATAAACCTTGCTGCTATACCTCCACAGCGTCCGAATCCAGTGGCTTCCTCGTCGGTTGGGCAGATTGGTGTGACTTCTGGACCAACATCGAGTCAAGGTTATGCTTATAGAGGACAGGGGTTAGCAGGTTCTGTTGGGAACCAGCAATATCTTCCTTCTCAGCAGGGTGCTAACATGAGACCGCCTCAATCACAGGGGTTCGCAGGTTCTGTTGCGAACCAGCAATATCTACCTTCGCAGCAGAATGTTAACATGAGACCACCTCAATCACAGGGGTTATCAGGTCCTATTTCAAACCAGCAATTTCTACCTTTGCAGCAGAATATTAACACGAGACCGCCTCAATCACAGGGGTTAGCAGGTCCTGTTGGGAACCAGCAGTTTCTACCTTCGCAGCAGAGTCCTACTATGAGACCACCTCAATCACAGGGATTTTCAGGTTTTGTTGCAAATCCACAATATCTTCCTTCCCAGCAGAATCCAAACATGAGACCAACTCAATCCATGCCAACTGTCAGTGCTCCTGGTCCACAACAATTCATGCCTGCTGGTAACACTCCTCGTCCACCTCAGTTGATGCCCTCCGGTACAGCCCCTCGTCCGCAACAGGGTTTTGCAGGTCCCAATCTCTCAAATGCTAACATCTCAAATGATTGGAATGGTGGAAGGACTGGTATGGCTCCAGCTCAGCCTGCAGGAATCACTCAATCACCTGCCTTATCAACACCAACATCGCCGTCTCTGGTCTCGCCGGTCTCCCAGCCAACACCTGTTACCACTAAAGCATTGACTGTGTCTGGAAATGGGTACCCTTCCCGTCCAGTTTTGGGCGACGATTTTTTCTCTACTGCTGCATCCACACCAAAACAAGACCCTACTCGACAGAATTATTCTGTTAGCAGTGCACCTGCCTCATCATCCATTGTTCCAGTTTCCAGTAGTGCCAACCCTGCAAGTAGGCAAAGTTCACTTGATTCATTGCAGAGTGCATTCTCAATGCCACTTACAAATAGCCAGATTCCGCGGACACAGTCTTTACCAAACACAAACCAGCAAATTTCACCACCAGCTTCTTCTCCGCTTACCACATCTGGGAGATCGGTTGGACTTGGAAATACTAGTTCCGACAATTCACAGCCTCCGTGGCCAAAAATGAAACCTTTTGATGTGCAGAAGTATAGGAAGGTTTTTATGGAAGTTGACACCGACAGGGATGGGAAAATCACTGGGGAGGAGGCACGCACTCTTTTTATAAGTTGGAGATTACCAATAGATGTCTTAAAGAAGGTGTGGGACTTATCTGATCAAGATAATGATAGCATGCTTTCATTGAGGGAGTTTTGCTATGCTGTTTATTTGATGGAGCGGTATAGGGAAGGTCGTCCTCCTCCACAGTCTCTTCCAAGTAGTGTTATATTTGACGAAACATTGATGTCTATGACTGGGCATCCGAATATTGCTTATGGAAATGCAGCATGGAATGTAGGCCCAGGTTTTCAGCAGCAACCAGGGAGGCCAGGTGCTCCGCCAGTGGCGCCAGCAGCTGGTCTGAGGCCACCAGTGCAAGGAACGCCTGCTCAGGTTGACAGCACTGTGCCGCCCGATCAGAAAAAGTTTGGAACATCTGCGTTGGACGATTCCTTTTTGAACGACACAGATAATAGTGAGCAAAATATTGAGACTGCAGGGAAAAAGGCTGAAGAAACACAGAATATGATATTGGATTCAAAAGAGAAGATTGAGTTGTACCGCAACAAAATGCAGGAATTGGTCCTGTATAAAAGCAGATGTGATAACCGCTTAAATGAGATTACAGAAAGGGCATCTGCAGATAAGCGTGAGGCAGAATCATTGAGCAAGAAATATGAAGAGAAATACAAACAAGTTTCAGAAATAGCATCTAAATTGACTGTAGAAGAAGCTAAATTTCGTGATATACAGGAAAGGAAGGTGGAGTTGCAGCAAGCCATTGTCAAAATGGAACAAGGAGGCAGTGCAGATGGTATTCTTCAGGTTCGTGCTGATCGCATACAATCAGATCTTGAGCAGTTATTTAGGGCTTTTGATGAACGGTGCAAGAAACATGGAATGGATGTGAAGTCGGTTGCAATGGTTCCGCTTCCTGAAGGTTGGCAACCCGGTAATCCAGAGGGGGCAGCTGTTTGGGATGAAGATTGGGATAAATTTGAAGATGAAGGATTTGCCAATGATCTCACTTTTGATACGAAAAATGCATCTTCAGAGCCAAAACCTTCATTCATTCCCGGAGAACAAAATTCTTTTGATGATAATTCTGTTCATGGTTCACCTGTGAATGCAAATGGTAGGCAAGAAATTTTTACTAATGGTGATTATACAGCCGAGGAGGAATCTTATGTACAAAGTGAAGATGACTTGGCACGAAGCCCCCGTGATAGCCCATTTGGAAGGAATGCAGTGGAGAGTCCTTCTAAGGATTTTTCAACCGCTCACTTTGATAAAGCTTCCGAAGCAGATGCAGAAACACATAGAAGTTTTGATGAATCAACCTGGGGTGCCTTTGACAATAATGATGATGTGGACTCGGTGTGGGGTTTTAACACCAAGGACTCTGACTTGGATAAGCAGGGAGATTTCTTTAAATCGGGTGATTTTGGTTTAAATCCAGTTAGAACAGGATCTACTGTTACAGATGGTGCATTCCATACAAAAAGCCCTTTTGCTTTTGATGATTCAGTGCCTGGAACTCCATTTTCCAAGTTTGGAAACTCTCCAAGGTACAGTGAGGCAGGGGATCACTTCTTTGAAACGTCAAGGTTCGATTCCTCCTTCAGCATGCATGAAAGTGGAAATTCTCCGCAAGCAGAGAGATTTACGAGATTTGATTCCATTAGTAGCAGCAGAGATTTTGGCAACAATCAAGAGAAATTTTCAAGGTTTGATTCCATTAGTAGCAGCAAGGATTTTGGCTACAGTCACGAAAAGTTTTCAAGGTTTGATTCCATAAGCAGCAGCAAAGATTTCGGTTACAATCCTCCTGATACGCTGACAAGGTTTGATTCCATGAGTAGCAGCAAAGATTTTGGCTTCGGTGGTCAAGGACATGCAAGGTTTGATTCAATTAGTAGCAGCAAGGACTTGGGCTACAGTGCTCCATTCTCTTTTGATGACTCTGATCCATTCGGTTCCTCTGGCCCATTTAAGGTCACTTCAGATAATCAATCTCCAAAGAAAGGCTCTGATAAGTGGAGTGCGTTCTAG 3543 0.4496 MAAPPNMDQFEAFFRRADLDGDGRISGPEAVNFFQGSNLPQNVLAQVWMHADQAKTGFLGRNDFYNALKLVTVAQSKRDLTPDIVKAALFGPAASKIPAPQINLAAIPPQRPNPVASSSVGQIGVTSGPTSSQGYAYRGQGLAGSVGNQQYLPSQQGANMRPPQSQGFAGSVANQQYLPSQQNVNMRPPQSQGLSGPISNQQFLPLQQNINTRPPQSQGLAGPVGNQQFLPSQQSPTMRPPQSQGFSGFVANPQYLPSQQNPNMRPTQSMPTVSAPGPQQFMPAGNTPRPPQLMPSGTAPRPQQGFAGPNLSNANISNDWNGGRTGMAPAQPAGITQSPALSTPTSPSLVSPVSQPTPVTTKALTVSGNGYPSRPVLGDDFFSTAASTPKQDPTRQNYSVSSAPASSSIVPVSSSANPASRQSSLDSLQSAFSMPLTNSQIPRTQSLPNTNQQISPPASSPLTTSGRSVGLGNTSSDNSQPPWPKMKPFDVQKYRKVFMEVDTDRDGKITGEEARTLFISWRLPIDVLKKVWDLSDQDNDSMLSLREFCYAVYLMERYREGRPPPQSLPSSVIFDETLMSMTGHPNIAYGNAAWNVGPGFQQQPGRPGAPPVAPAAGLRPPVQGTPAQVDSTVPPDQKKFGTSALDDSFLNDTDNSEQNIETAGKKAEETQNMILDSKEKIELYRNKMQELVLYKSRCDNRLNEITERASADKREAESLSKKYEEKYKQVSEIASKLTVEEAKFRDIQERKVELQQAIVKMEQGGSADGILQVRADRIQSDLEQLFRAFDERCKKHGMDVKSVAMVPLPEGWQPGNPEGAAVWDEDWDKFEDEGFANDLTFDTKNASSEPKPSFIPGEQNSFDDNSVHGSPVNANGRQEIFTNGDYTAEEESYVQSEDDLARSPRDSPFGRNAVESPSKDFSTAHFDKASEADAETHRSFDESTWGAFDNNDDVDSVWGFNTKDSDLDKQGDFFKSGDFGLNPVRTGSTVTDGAFHTKSPFAFDDSVPGTPFSKFGNSPRYSEAGDHFFETSRFDSSFSMHESGNSPQAERFTRFDSISSSRDFGNNQEKFSRFDSISSSKDFGYSHEKFSRFDSISSSKDFGYNPPDTLTRFDSMSSSKDFGFGGQGHARFDSISSSKDLGYSAPFSFDDSDPFGSSGPFKVTSDNQSPKKGSDKWSAF* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4356 1180 SUPERFAMILY EF-hand 4 84 IPR011992 -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 331 368 - -
Mtr3g4356 1180 Coils Coil 737 757 - -
Mtr3g4356 1180 Gene3D - 5 101 - -
Mtr3g4356 1180 Coils Coil 702 733 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 384 427 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 303 324 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 210 427 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 112 169 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 840 924 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 598 656 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 110 169 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 210 281 - -
Mtr3g4356 1180 Pfam Cytoskeletal-regulatory complex EF hand 484 555 IPR000261 GO:0005515
Mtr3g4356 1180 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509
Mtr3g4356 1180 Pfam EF hand 11 27 IPR002048 GO:0005509
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 283 297 - -
Mtr3g4356 1180 ProSiteProfiles EF-hand calcium-binding domain profile. 489 524 IPR002048 GO:0005509
Mtr3g4356 1180 ProSiteProfiles EH domain profile. 490 573 IPR000261 GO:0005515
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 439 486 - -
Mtr3g4356 1180 Gene3D - 472 575 - -
Mtr3g4356 1180 SMART eh_3 1 94 IPR000261 GO:0005515
Mtr3g4356 1180 SMART eh_3 483 578 IPR000261 GO:0005515
Mtr3g4356 1180 CDD EH 494 560 IPR000261 GO:0005515
Mtr3g4356 1180 ProSiteProfiles EF-hand calcium-binding domain profile. 525 558 IPR002048 GO:0005509
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 625 656 - -
Mtr3g4356 1180 SUPERFAMILY EF-hand 479 573 IPR011992 -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 840 882 - -
Mtr3g4356 1180 Coils Coil 667 687 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 1158 1180 - -
Mtr3g4356 1180 SMART efh_1 493 521 IPR002048 GO:0005509
Mtr3g4356 1180 SMART efh_1 527 555 IPR002048 GO:0005509
Mtr3g4356 1180 SMART efh_1 9 37 IPR002048 GO:0005509
Mtr3g4356 1180 SMART efh_1 43 71 IPR002048 GO:0005509
Mtr3g4356 1180 CDD EH 10 76 IPR000261 GO:0005515
Mtr3g4356 1180 ProSiteProfiles EH domain profile. 6 96 IPR000261 GO:0005515
Mtr3g4356 1180 PANTHER EH DOMAIN 3 1067 - -
Mtr3g4356 1180 PANTHER EH DOMAIN 1108 1180 - -
Mtr3g4356 1180 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 3 1067 - -
Mtr3g4356 1180 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1108 1180 - -
Mtr3g4356 1180 MobiDBLite consensus disorder prediction 439 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4356 Mtr-Chr3 57525545 57536936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4356 4 90 EF-hand Containing Proteins AT1G20760 29.885 1.74e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4356 K12472 - cam:101508239 1931.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4356 3 57525545 57536936 Mtr3g4356 3 57525545 57536936 ECH