Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4346 ATGGACCTTCCTCTTCGCCTAGGGCTTCTCACTTTCCTATTACAGGTTTGCTTAATTTTATCTCTAACAGAAGCAAAAGTTTTGTCATCTAATGATAGAACACAAGGGGAAAAGCATTCTGTGGAGTATTGTGCAATGTATGACATTTGTGGAAAGCGAAGCGATGGTAAAGTAATAAATTGTCCATTTGGTTCACCTGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATTCAAAGTTTATGTCCAACAATTACGGGAAATGTTTGCTGTACAGGAGCTCAGTTTGACACATTAAGGACGCAAGTGCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTCTGAATCTATTCTGCGAGCTTACATGCTCTCCAAATCAGAGTTTATTTATCAACGTGACTACAGTGGACAAAGTTGGTGGTAATTTGACAGTTGGTAGCATCGATTATTTTGTAAGTGACGCATTTGGTGAAGGGTTATATAACTCCTGCAAGGATGTAAAGTTTGGCACAGCGAATTCTCTAGTTATGCAATTTATTGGTGGCGGTGCTCAAAATGTTAAAGAGTGGTTTGCATTTATTGGTAAAAAAGCAGCCCCTGGTGGTTTTGGTTCACCATATGCAATTATGTTCCCGCCAAATGCAACCAAGTCATCTGGGATGGAGCCTATGAATGTTTCAGCCTATTCATGCGGGGATATTTCTCTTGGTTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCTAGTTCATCTTCAACTACCACCCAAAAGAGGGATTCATGCTCCTTGAAAATTGGGACTTTAATGGTGAAGTGTGTTGACTTGACTTTAACAGTCTTATACATCATACTGCTAAGTGTGTTCTTAGGTTGGGGATTGTATTATCGGACAAGGGAAAGAAAGCCGGCATATAGAACGAAATCAGTGTCTAATGTTATTAGTGGTGGGCAGCTGCATTCTCGTAATCAGGAGAAGGACGAGAACCTCCCTATGCACCAGATTATTGAAGATGTTTCACAAAACAGAAACGAAGTACGACTCTCAGCTGTGCAAGGATACATGTCAAATTTCTACAGGAAGTACGGATTATACGTAGCTAGAAACCCAATTATGGTCTTGGCTTCATCTTTGGCTATAGTTATTCTACTTTGTCTAGGTCTAATCAGATTCAAGGTTGAGACACGGCCTGAGAAGCTCTGGGTGGGACCCGGGAGTAAAGCAGCTGAAGAGAAGCAGTTTTTTGACAGCCATCTTGCTCCGTTTTACAGAATCGAACAGCTCATACTGGGAACAGTTCCAGATCATGTGAATAGTACATCACCAAGAATTGTGTCAGAGGACAACATTAAGTTTCTGTTTGAAGTACAAAAGAAGGTTGATGCAATTCGTGCTAATCATTCTGGCTTGATGGTATCTCTGCAAGACATCTGTTTGAAGCCACTAGACAAAGAATGTGCCACTCAAAGCATTCTGCAGTACTTCAAAATGGATCCCAACAATTTCGACAATTATGGTGGAGTTGAGCATCTCACTTACTGTTTTGAGCATTATTCCTCGGCAGATCAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACTGTATTAGGAGGTTTTTCTGGGAATGACTATTCTGGGGCTTCTGCATTTATTGTAACTTACCCAGTAAATAATGCTATTGATGAAGAAGGAAATGAAAATGCAAAGGCAGTTGCATGGGAGAAGACCTTTATTCAGTTAGTGAAGGATGAGTTGTTACCAATGGCACAGTCGAAAAATTTGACACTTGCTTTTTCATCTGAAAGCTCTATTGAGGAAGAATTGAAAAGAGAAAGTACTGCGGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATACGCCCCAGCTTTCTTCTTTCTATATTTCATCTAAGGTATTGCTTGGTCTTTTAGGAGTAATTCTTGTCATGCTGTCTGTCCTTGGATCTGTTGGAATTTTTAGTGCTCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTTCTAGCTGTTGGGGTGGATAATATGTGTATACTGGTTCATGCTGTGAAAAGGCAACAGCTGGAGTTACCTTTAGAAAGACGGATAAGCAATGCACTTGAGGAAGTTGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGCTGGAAGCTTCATTTCCATGCCTGCGTGTCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCATTCGTAGCTCTGATAGCTCTTGACTCTTTGAGAGCAGAGGATAAGAGGGTTGATTGTTTTCCATGCATAAAAGTGCATTCTTTGCATGCAGAATCTGATAAAGGCATTGAACAAAGGAAACCTGGTTTGTTGGCTCGATATATGAAGGAGGTTCACGCTCCAATTCTAAGTATTTGGGGAGTAAAAATAGCTGTCATTGCAATTTTTGTGGCATTTGCATTGGCTAGCATTGCTTTGAGCACTAGAATTGAACCTGGATTGGAGCAGGAGATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAATAATGTTACAGAATATCTCAGAATTGGGCCACCTTTGTATTTTGTTGTGAAGAACTATAACTACAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATAAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATCGCTAAAGCGGCCCTAGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCTTCTTGGCTCGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGTTGCTGCAGGAAGTTCACTAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGAAGACGATTCTTGTGTTTCAGTTGGAGTATGTAACGATTGCACAACGTGTTTCCGTCACTCAGATCTTCACAATGATCGTCCTTCCACAACACAATTTAGGGAGAAACTGCCGTGGTTTCTTAGTGCTCTCCCATCTGCTGATTGTGCAAAGGGTGGTCATGGGGCGTACACCAGCAGTGTTGAACTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCATTCCGTACATATCATACCCCACTCAACAAGCAGGTCGACTTTGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATTGAGATCTTCCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTAACATATGGAAGACTGCACTGGTCAATCTTGCAATAGCTATTGGTGCAGTATTTATTGTGTGCTTGGTTATCACAGGCAGTTTATGGAGTTCCGCAATCATTTTGTTGGTGTTGACAATGATTGTTGTTGATCTTATGGGTATGATGGCCATTCTGAATATCCAATTGAATGCCATCTCAGTTGTCAACCTCGTTATGTCAGTGGGTATTGCTGTTGAGTTTTCCGTGCATTTGACTCATTCTTTCACTGTTGCAAGTGGGGATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGGGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTCATCGTTCTTTGCTTCTCAAGAACAGAAGTTTTTGTGGTTTATTACTTTCAAATGTACTTGTCATTAGTACTTCTTGGTTTTTTGCACGGACTTGTTTTCTTGCCGGTGGTGTTAAGCATGTTTGGTCCACCTTCAAGATGTACAAATACTGACCAAGGGGAAGATCGTTCATCAACTTCTTCGTAG 3864 0.4097 MDLPLRLGLLTFLLQVCLILSLTEAKVLSSNDRTQGEKHSVEYCAMYDICGKRSDGKVINCPFGSPAVKPDDLLSSKIQSLCPTITGNVCCTGAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTTVDKVGGNLTVGSIDYFVSDAFGEGLYNSCKDVKFGTANSLVMQFIGGGAQNVKEWFAFIGKKAAPGGFGSPYAIMFPPNATKSSGMEPMNVSAYSCGDISLGCSCGDCPSSSVCSSSSSTTTQKRDSCSLKIGTLMVKCVDLTLTVLYIILLSVFLGWGLYYRTRERKPAYRTKSVSNVISGGQLHSRNQEKDENLPMHQIIEDVSQNRNEVRLSAVQGYMSNFYRKYGLYVARNPIMVLASSLAIVILLCLGLIRFKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILGTVPDHVNSTSPRIVSEDNIKFLFEVQKKVDAIRANHSGLMVSLQDICLKPLDKECATQSILQYFKMDPNNFDNYGGVEHLTYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNENAKAVAWEKTFIQLVKDELLPMAQSKNLTLAFSSESSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPQLSSFYISSKVLLGLLGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLERRISNALEEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIALDSLRAEDKRVDCFPCIKVHSLHAESDKGIEQRKPGLLARYMKEVHAPILSIWGVKIAVIAIFVAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVTEYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEIAKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPEDDSCVSVGVCNDCTTCFRHSDLHNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQVDFVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITGSLWSSAIILLVLTMIVVDLMGMMAILNIQLNAISVVNLVMSVGIAVEFSVHLTHSFTVASGDKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCTNTDQGEDRSSTSS* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4346 1287 TIGRFAM 2A060601: Niemann-Pick C type protein family 44 1268 IPR004765 GO:0005319|GO:0016021
Mtr3g4346 1287 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 582 787 - -
Mtr3g4346 1287 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1075 1273 - -
Mtr3g4346 1287 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1077 1268 - -
Mtr3g4346 1287 Gene3D Multidrug efflux transporter AcrB transmembrane domain 586 796 - -
Mtr3g4346 1287 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 10 1286 - -
Mtr3g4346 1287 PANTHER PATCHED FAMILY PROTEIN 10 1286 - -
Mtr3g4346 1287 Pfam Patched family 445 903 IPR003392 GO:0016021
Mtr3g4346 1287 Pfam Patched family 1055 1267 IPR003392 GO:0016021
Mtr3g4346 1287 Pfam Niemann-Pick C1 N terminus 42 275 IPR032190 -
Mtr3g4346 1287 ProSiteProfiles Sterol-sensing domain (SSD) profile. 624 787 IPR000731 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4346 Mtr-Chr3 57411916 57429376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4346 38 1287 Miscellaneous Gene Families AT1G42470 72.800 0.0 1851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4346 K12385 - gmx:100813262 2137.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4346 3 57411916 57429376 Mtr3g4346 3 57411916 57429376 ECH