Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4315 ATGCCTACACTGGTAACCGAAGAATCTCAATCCCAAATTACCAACTTGAAGCCCATTTTTTGTGCTTCAGGAGTGAAAGGCAACAAAGTTACAACTTTGTCCTCAGAGGTTACTATCTCAGATTTCATTCAATCCATTATTAAAACCAAACCAACTGAAAATGACTCGCCATTTAGTGTTCTTGATTTAAGGGTCATAATTGATCTTATGAACAAATGGACCACAGAACTTCCAACGGTTAAGCCGTTTTATGCCGTTAAGTGTAACCCTAATATTTCACTTATAGGCACACTAGCTTCACTCGGCTCCAATTTTGACTGCGCCAGCCGTGCCGAAATTGAATCTGTTTTATCACTTGGCGTTTCACCCGACAAGATCATTTATGCCAACCCGTGTAAATCAGAGTCACACATTAAGTATGCCGCAAGTGTTGGCGTAAATGTTACAACTTTCGACTGCGCTGGAGAAGTCGAAAAAATTAAAAAATGGCACCCAAAATGTGAGCTCCTCCTCCGTATTAAACCGGAGGAAGACAGCGGAGCACGTTCGTGTTTGGGTCTCAAATATGGCGCGCTTCATAACGAAGTTCCCGAGCTTCTCAAGGCAGCTGACATGGCTGGACTTAAAGTAACCGGCGTGTCTTTTCACATAGGCAGTGGAGGAGCCGACGCAAAAGCCTACCACGGAGCCATATTATTGGCTAAAGAAGTTTTTGAAACGGCTTCACGGCTTGGAATGCCAAAAATGAAAATTCTTGATATTGGTGGTGGGTTCACTTCTGGCTCCAAATTTGATGAAGCTGCATTCAACGTGAACGATGCAATAAAAACACATTTCGGAAATGATGAAGATCTTGTTGTTATTGGTGAACCTGGTCGTTACTTTGCGGAAACGGCATTTACGTTAGCAACAAAAGTTATTGGGAAACGTGTGAGAGGTGAAATGAGAGAGTATTGGATCGATGATGGAATTTACGGAACTCTTAATAACATTGTGTTTGATTATGCTATTGTCAAATGCATGCCACTTAGGTTTGGTTCAAAACCTGAGAATGTTATATGCAAAGATCCTAAAACTTACCCTTCAACGGTTTTTGGACCCACTTGTGATTCAGTTGATACGGTTCTTAAAGAGTATGAGTTACCTGAACTTAAGGTGAATGATTGGCTTGTGTTTCCAAATATGGGTGCTTATACAACTTCTTCTGGAACCAATTTCAATGGGTTTAGCTCCTCAGCTGAGCATATTCACATTGCATGTTCAACTCCAAGTCTTGTCGGGCGTTAA 1287 0.4149 MPTLVTEESQSQITNLKPIFCASGVKGNKVTTLSSEVTISDFIQSIIKTKPTENDSPFSVLDLRVIIDLMNKWTTELPTVKPFYAVKCNPNISLIGTLASLGSNFDCASRAEIESVLSLGVSPDKIIYANPCKSESHIKYAASVGVNVTTFDCAGEVEKIKKWHPKCELLLRIKPEEDSGARSCLGLKYGALHNEVPELLKAADMAGLKVTGVSFHIGSGGADAKAYHGAILLAKEVFETASRLGMPKMKILDIGGGFTSGSKFDEAAFNVNDAIKTHFGNDEDLVVIGEPGRYFAETAFTLATKVIGKRVRGEMREYWIDDGIYGTLNNIVFDYAIVKCMPLRFGSKPENVICKDPKTYPSTVFGPTCDSVDTVLKEYELPELKVNDWLVFPNMGAYTTSSGTNFNGFSSSAEHIHIACSTPSLVGR* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4315 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 84 102 IPR000183 GO:0003824
Mtr3g4315 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 104 116 IPR000183 GO:0003824
Mtr3g4315 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 207 220 IPR000183 GO:0003824
Mtr3g4315 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 IPR000183 GO:0003824
Mtr3g4315 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 396 409 IPR000183 GO:0003824
Mtr3g4315 428 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 84 102 IPR022653 -
Mtr3g4315 428 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 297 396 IPR022643 GO:0003824
Mtr3g4315 428 Gene3D Alanine racemase 66 295 IPR029066 -
Mtr3g4315 428 PANTHER ORNITHINE DECARBOXYLASE-LIKE 27 420 - -
Mtr3g4315 428 SUPERFAMILY PLP-binding barrel 55 299 IPR029066 -
Mtr3g4315 428 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 53 415 IPR009006 GO:0003824
Mtr3g4315 428 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 65 296 IPR022644 GO:0003824
Mtr3g4315 428 SUPERFAMILY Alanine racemase C-terminal domain-like 278 415 IPR009006 GO:0003824
Mtr3g4315 428 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 242 259 IPR022657 -
Mtr3g4315 428 CDD PLPDE_III_ODC 55 416 - -
Mtr3g4315 428 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 27 420 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 56 80 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 82 109 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 126 150 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 156 178 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 322 335 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 363 373 IPR002433 GO:0006596
Mtr3g4315 428 PRINTS Ornithine decarboxylase signature 383 396 IPR002433 GO:0006596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4315 K01581 - gmx:548088 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4315 3 57056691 57058370 Mtr3g4315 3 57056691 57058370 ECH